Skip to main content
Rice

Table 3 Kimura 2p Distance Variation within LTR Retrotransposon Families

From: Assessing the Extent of Substitution Rate Variation of Retrotransposon Long Terminal Repeat Sequences in Oryza sativa and Oryza glaberrima

Family

Elements

Lowest k2p

Highest k2p

Variation

%GC

Atlantys

4

0.014

0.024

1.71

38.94

BAJIE

17

0.016

0.05

3.13

45.01

COPI1

3

0.031

0.048

1.55

42.38

Copia_Ecgs

5

0.021

0.055

2.62

46.49

GYPSY1

3

0.022

0.042

1.91

47.38

OSR_8

4

0.021

0.03

1.43

46.20

RIRE10

11

0.011

0.044

4.00

47.15

RIRE2

3

0.020

0.045

2.25

39.30

SZ-50

3

0.009

0.027

3.00

49.42

  1. Only families having at least three elements in the Chr3S were considered. Variation is the ratio between the highest and the lowest K2p distance values for the elements of that family. %GC is the G+C content: value is the average of the orthologous LTRs
Back to article page