Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

Pariasca-Tanaka, Juan; Satoh, Kouji; Rose, Terry; Mauleon, Ramil; Wissuwa, Matthias

doi:10.1007/s12284-009-9032-0

Rice

Table 8 Genes with the Greatest Fold Difference in Root Expression Between Genotypes (p ≤ 0.001; Based on Data from Both P Treatments)

From: Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

Fold difference	TIGR5-based annotation	TIGR5 locus
Expressed at higher level in NIL6-4
6.42	NAD(P)H-dependent oxidoreductase, putative	Os10g02390^a
2.69	Os wall-associated protein kinase mRNA, complete cds.\|PLN	AK105147
2.48	Thionin precursor, putative	Os06g32160
2.40	Xyloglucan endotransglucosylase/hydrolase precursor, putative	Os11g33270
2.30	Xyloglucan endotransglucosylase/hydrolase protein 15 precursor, putative	Os04g51460
2.29	Xylanase inhibitor protein 2 precursor, putative	Os11g47520
2.18	Xyloglucan endotransglucosylase/hydrolase protein 23 precursor, putative	Os06g48160
2.11	IAA-amino acid hydrolase ILR1 precursor, putative	Os03g62060
2.06	L. esculentum dehydroquinate dehydratase/shikimate:NADP oxidoreductase mRNA, complete cds.\|PLN	AK058923^b
1.79	Arginine decarboxylase, putative	Os04g01690
1.76	Prefoldin subunit 2, putative	Os12g30060^b
1.60	Gibberellin receptor GID1L2, putative	Os07g44910
1.59	Cyclopropane fatty acid synthase, putative	Os12g16650
1.58	ATP-dependent RNA helicase HAS1, putative	Os01g43130
1.51	Polygalacturonase-1 noncatalytic beta subunit precursor, putative	Os06g17000
1.50	Catalase isozyme A, putative	Os02g02400
Expressed at higher level in Nipponbare
1.68	3-N-Debenzoyl-2-deoxytaxol N-benzoyltransferase, putative	Os07g14080
1.68	Protein kinase domain containing protein	Os11g44560
1.69	Os (japonica cultivar-group) high-affinity phosphate transporter 2 mRNA, complete cds.\|PLN	AK108907
1.71	Aspartic proteinase nepenthesin-1 precursor, putative	Os10g39260
1.71	Peptide transporter PTR2, putative	Os02g46460
1.75	Triacylglycerol lipase, putative	Os06g10850
1.80	Major pollen allergen Bet v 1-D/H, putative	Os12g36850^a
1.92	RGH1A, putative	Os12g36720^a
1.98	Vacuolar protein sorting 26, putative	Os12g31640^a
2.00	F-box domain containing protein	Os10g04700^a
2.02	Tartrate-resistant acid phosphatase type 5 precursor, putative	Os10g02750^a
2.10	Cytochrome P450 76C2, putative	Os02g36110
2.12	Retrotransposon, putative, centromere specific	Os10g07160^a
2.18	Retrotransposon protein, putative, unclassified	Os12g35460^a,b
2.20	Bowman–Birk type bran trypsin inhibitor precursor, putative	Os01g03390
2.23	Malate dehydrogenase, glyoxysomal precursor, putative	Os07g43700
2.31	Amidohydrolase family protein, putative	Os12g28270^a,b
2.46	Transposon protein, putative, unclassified	Os10g05020^a
2.48	Amidohydrolase family protein, putative	Os12g28270^a,b
2.71	Vegetative cell wall protein gp1 precursor, putative	Os07g23640^a
3.23	Vegetative cell wall protein gp1 precursor, putative	Os07g23660^a
3.95	Peptidyl-prolyl cis–trans isomerase, putative	Os10g06630^a,b
4.20	F-box domain containing protein	Os10g03600^a
5.07	csAtPR5, putative	Os12g07500^a,b
5.28	NB-ARC domain containing protein	Os12g10330^a
5.41	OsWAK98-OsWAK receptor-like cytoplasmic kinase	Os10g02360^a,b
7.37	Rust resistance-like protein RP1-3, putative	Os12g10340^a
8.68	AATP1 (AAA-ATPASE 1); ATP binding/ATPase	AK071141^b

Only genes with informative annotation and that are “present” in at least one tissue are shown
^aLocalized within Kasalath introgressions present on chromosomes 1, 7, 10, and 12 (Torabi et al. 2009)
^bGenes present in shoot and root

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