Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

Pariasca-Tanaka, Juan; Satoh, Kouji; Rose, Terry; Mauleon, Ramil; Wissuwa, Matthias

doi:10.1007/s12284-009-9032-0

Rice

Table 7 Genes with the Greatest Fold Difference in Shoot Expression Between Genotypes (p ≤ 0.001; Based on Data from Both P Treatments)

From: Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

Fold difference	TIGR5-based annotation	TIGR5 locus
Expressed at higher level in NIL6-4
4.1	F-box domain containing protein	Os10g03620^a
3.6	DOGT1 (DON-glucosyltransferase); UDP-glycosyltransferase/transferase, transferring glycosyl groups	AK066178
3.6	Alpha-DOX2, putative	Os12g26290^a
2.6	L. esculentum dehydroquinate dehydratase/shikimate:NADP oxidoreductase mRNA, complete cds.\|PLN	AK058923^a
2.5	Prefoldin subunit 2, putative	Os12g30060^a,b
2.3	O-methyltransferase ZRP4, putative	Os11g20080
2.2	Chloride channel protein CLC-a, putative	Os12g25200
1.9	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, putative	Os12g08170
1.9	Retrotransposon protein, putative, Ty1-copia subclass	Os04g49790
1.9	Aspartate-semialdehyde dehydrogenase, putative	Os03g55280
1.9	Transposon protein, putative, mutator subclass	Os03g55830
1.9	DNA gyrase subunit A, putative	Os03g59750
1.8	40S ribosomal protein SA, putative	Os07g42450
1.8	40S ribosomal protein S6, putative	Os07g42950
1.7	40S ribosomal protein S25-1, putative	Os08g44480
1.7	Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast/phosphoribosylaminoimidazole synthetase	AK102151
1.7	5S rRNA binding protein, putative	Os03g41612
1.7	40S ribosomal protein S20, putative	Os03g14530
1.6	RNA binding protein, putative	Os07g23244
1.6	Os ribosomal protein mRNA, complete cds.\|PLN	AK062150
1.6	Exosome complex exonuclease 1, putative	Os08g02360
1.6	DNA binding protein, putative	Os07g12630
1.6	Glucan endo-1,3-beta-glucosidase 7 precursor, putative	Os02g53200
1.6	Protein TOC75, chloroplast precursor, putative	Os03g16440
Expressed at higher level in Nipponbare
1.85	Phosphatidylinositol-4-phosphate 5-kinase family protein	Os04g59540
1.85	Inorganic phosphate transporter 1–5, putative	Os04g10750
1.95	Amino acid transporter, putative	Os12g08090^a
1.96	Aquaporin TIP1.2, putative	Os01g74450
2.09	F-box domain containing protein	Os10g04700^a
2.11	PDI-like protein, putative	Os04g51920
2.14	F-box domain containing protein	Os10g03730^a
2.18	Vacuolar protein sorting 26, putative	Os12g31640^a
2.21	F-box domain containing protein	Os10g03600^a
2.25	Amidohydrolase family protein, putative	Os12g28270^a
2.29	dnaJ-like protein, putative	Os01g42190^a
2.36	Stripe rust resistance protein Yr10, putative	Os10g04342^a,b
2.48	Amidohydrolase family protein, putative	Os12g28270^a,b
2.52	AATP1 (AAA-ATPASE 1); ATP binding/ATPase	AK07114^a,b
2.61	NB-ARC domain containing protein	Os12g10710^a
2.69	NAD(P)H-dependent oxidoreductase, putative	Os10g02380^a*
2.84	Retrotransposon protein, putative, unclassified	Os12g35460^a,b
3.10	Nitrilase-associated protein, putative	Os12g31780^a
3.20	Disease resistance protein RPM1, putative	Os10g04674^a,b
3.22	RGH1A, putative	Os12g33160^a
3.31	OsWAK98-OsWAK receptor-like cytoplasmic kinase	Os10g02360^a,b
3.46	csAtPR5, putative	Os12g07500^a,b
3.49	3-N-Debenzoyl-2-deoxytaxol N-benzoyltransferase, putative	Os12g27254^a
4.08	Major myoinositol transporter iolT, putative	Os12g32940^a
4.96	Peptidyl-prolyl cis–trans isomerase, putative	Os10g06630^a,b
5.85	Transposon protein, putative, CACTA, En/Spm subclass	Os10g04050^a
5.99	NB-ARC domain containing protein	Os12g32660^a,b
8.69	Lipoxygenase 2.1, chloroplast precursor, putative	Os12g37260^a

Only genes with informative annotation and that are “present” in at least one tissue are shown
^aLocalized within Kasalath introgressions present on chromosomes 1, 7, 10, and 12 (Torabi et al. 2009)
^bGenes present in shoot and root

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