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Table 7 Genes with the Greatest Fold Difference in Shoot Expression Between Genotypes (p ≤ 0.001; Based on Data from Both P Treatments)

From: Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

Fold difference TIGR5-based annotation TIGR5 locus
Expressed at higher level in NIL6-4
4.1 F-box domain containing protein Os10g03620a
3.6 DOGT1 (DON-glucosyltransferase); UDP-glycosyltransferase/transferase, transferring glycosyl groups AK066178
3.6 Alpha-DOX2, putative Os12g26290a
2.6 L. esculentum dehydroquinate dehydratase/shikimate:NADP oxidoreductase mRNA, complete cds.|PLN AK058923a
2.5 Prefoldin subunit 2, putative Os12g30060a,b
2.3 O-methyltransferase ZRP4, putative Os11g20080
2.2 Chloride channel protein CLC-a, putative Os12g25200
1.9 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, putative Os12g08170
1.9 Retrotransposon protein, putative, Ty1-copia subclass Os04g49790
1.9 Aspartate-semialdehyde dehydrogenase, putative Os03g55280
1.9 Transposon protein, putative, mutator subclass Os03g55830
1.9 DNA gyrase subunit A, putative Os03g59750
1.8 40S ribosomal protein SA, putative Os07g42450
1.8 40S ribosomal protein S6, putative Os07g42950
1.7 40S ribosomal protein S25-1, putative Os08g44480
1.7 Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast/phosphoribosylaminoimidazole synthetase AK102151
1.7 5S rRNA binding protein, putative Os03g41612
1.7 40S ribosomal protein S20, putative Os03g14530
1.6 RNA binding protein, putative Os07g23244
1.6 Os ribosomal protein mRNA, complete cds.|PLN AK062150
1.6 Exosome complex exonuclease 1, putative Os08g02360
1.6 DNA binding protein, putative Os07g12630
1.6 Glucan endo-1,3-beta-glucosidase 7 precursor, putative Os02g53200
1.6 Protein TOC75, chloroplast precursor, putative Os03g16440
Expressed at higher level in Nipponbare
1.85 Phosphatidylinositol-4-phosphate 5-kinase family protein Os04g59540
1.85 Inorganic phosphate transporter 1–5, putative Os04g10750
1.95 Amino acid transporter, putative Os12g08090a
1.96 Aquaporin TIP1.2, putative Os01g74450
2.09 F-box domain containing protein Os10g04700a
2.11 PDI-like protein, putative Os04g51920
2.14 F-box domain containing protein Os10g03730a
2.18 Vacuolar protein sorting 26, putative Os12g31640a
2.21 F-box domain containing protein Os10g03600a
2.25 Amidohydrolase family protein, putative Os12g28270a
2.29 dnaJ-like protein, putative Os01g42190a
2.36 Stripe rust resistance protein Yr10, putative Os10g04342a,b
2.48 Amidohydrolase family protein, putative Os12g28270a,b
2.52 AATP1 (AAA-ATPASE 1); ATP binding/ATPase AK07114a,b
2.61 NB-ARC domain containing protein Os12g10710a
2.69 NAD(P)H-dependent oxidoreductase, putative Os10g02380a*
2.84 Retrotransposon protein, putative, unclassified Os12g35460a,b
3.10 Nitrilase-associated protein, putative Os12g31780a
3.20 Disease resistance protein RPM1, putative Os10g04674a,b
3.22 RGH1A, putative Os12g33160a
3.31 OsWAK98-OsWAK receptor-like cytoplasmic kinase Os10g02360a,b
3.46 csAtPR5, putative Os12g07500a,b
3.49 3-N-Debenzoyl-2-deoxytaxol N-benzoyltransferase, putative Os12g27254a
4.08 Major myoinositol transporter iolT, putative Os12g32940a
4.96 Peptidyl-prolyl cistrans isomerase, putative Os10g06630a,b
5.85 Transposon protein, putative, CACTA, En/Spm subclass Os10g04050a
5.99 NB-ARC domain containing protein Os12g32660a,b
8.69 Lipoxygenase 2.1, chloroplast precursor, putative Os12g37260a
  1. Only genes with informative annotation and that are “present” in at least one tissue are shown
  2. aLocalized within Kasalath introgressions present on chromosomes 1, 7, 10, and 12 (Torabi et al. 2009)
  3. bGenes present in shoot and root