Table 3 Nucleotide Change Conservation for Validated SFPs Between BTx623, Rio, and Sugarcane
From: Molecular Markers for Sweet Sorghum Based on Microarray Expression Data
S. bicolor gene | Position | Sugarcane probe set | Probe pair # | t value | BTx623-Rio-Sc SNP |
|---|---|---|---|---|---|
Sb02g006330 | Ch2_7909203..7909180 | Sof.1519.2.S1_at | 8 | 23 | C–T–C |
Sb02g000780 | Ch2_628587..628568 | Sof.1326.1.S1_a_at | 5 | 15.2 | A–G–G |
Sb02g006420 | Ch2_8048752..8048728 | Sof.2471.1.S1_at | 5 | 34.1 | C–A–C |
Ch2_8048741..8048717 | 6 | 19.8 | Same | ||
Sb02g009980 | Ch2_14533601..14533625 | SofAffx.868.1.S1_s_at | 9 | 13.7 | A–T–A/C–T–C |
Ch2_14533610..14533630 | 10 | 12.9 | Same | ||
Sb03g037370 | Ch3_65336537..65336560 | SofAffx.772.1.S1_s_at | 7 | 19.1 | C–G–C |
Sb03g012420 | Ch3_14371043..14371019 | Sof.2629.3.S1_a_at | 8 | 38.2 | C–T–C |
Ch3_14371036..14371016 | 9 | 19.4 | Same | ||
Sb03g039090 | Ch3_66876720..66876744 | Sof.5269.1.S1_at | 6 | 8.1 | T–A–T/C–A–C |
Ch3_66876724..66876748 | 7 | 12 | Same | ||
Ch3_66876727..66876751 | 8 | 17.1 | Same | ||
Ch3_66876730..66876754 | 9 | 16.1 | Same | ||
Ch3_66876734..66876758 | 10 | 45.8 | Same | ||
Sb04g019020 | Ch4_44439369..44439345 | Sof.3814.1.S1_at | 8 | 21.9 | C–T–T |
Ch4_44439366..44439342 | 9 | 15.3 | Same | ||
Ch4_44439307..44439289 | 11 | 25.5 | T–G–T | ||
Sb04g037170 | Ch4_66851287..66851311 | Sof.151.1.S1_at | 8 | 19.4 | G–C–G |
Sb05g001680 | Ch5_1816812..1816788 | Sof.1902.1.S1_s_at | 6 | 33.1 | A–G–G |
Sb07g005930 | Ch7_8393958..8393934 | Sof.1190.1.S1_at | 8 | 23.3 | T–G–T |
Sb08g008320 | Ch8_15917006..15917030 | SofAffx.1412.1.A1_s_at | 2 | 15.1 | T–C–C |
Sb08g002250 | Ch8_2360967..2360943 | Sof.2692.1.S1_at | 2 | 16.8 | A–G–A |
Ch8_2360780..2360756 | 5 | 22.1 | A–G–G | ||
Ch8_2360760..2360736 | 6 | 23.6 | T–C–C | ||
Sb09g006050 | Ch9_8732113..8732094 | SofAffx.1438.1.A1_s_at | 3 | 14.9 | C–G–C |
Ch9_8732054..8732030 | 7 | 82.5 | C–A–C | ||
Sb09g000820 | Ch9_624173..624197 | Sof.808.1.S1_at | 8 | 29 | G–C–G |
Sb09g005280 | Ch9_6782917..6782941 | Sof.5033.1.S1_at | 9 | 15.1 | A–G–G |
Sb10g007380 | Ch10_7220153..7220177 | SofAffx.287.1.S1_at | 7 | 14 | T–C–C |