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Table 3 Nucleotide Change Conservation for Validated SFPs Between BTx623, Rio, and Sugarcane

From: Molecular Markers for Sweet Sorghum Based on Microarray Expression Data

S. bicolor gene Position Sugarcane probe set Probe pair # t value BTx623-Rio-Sc SNP
Sb02g006330 Ch2_7909203..7909180 Sof.1519.2.S1_at 8 23 C–T–C
Sb02g000780 Ch2_628587..628568 Sof.1326.1.S1_a_at 5 15.2 A–G–G
Sb02g006420 Ch2_8048752..8048728 Sof.2471.1.S1_at 5 34.1 C–A–C
  Ch2_8048741..8048717   6 19.8 Same
Sb02g009980 Ch2_14533601..14533625 SofAffx.868.1.S1_s_at 9 13.7 A–T–A/C–T–C
  Ch2_14533610..14533630   10 12.9 Same
Sb03g037370 Ch3_65336537..65336560 SofAffx.772.1.S1_s_at 7 19.1 C–G–C
Sb03g012420 Ch3_14371043..14371019 Sof.2629.3.S1_a_at 8 38.2 C–T–C
  Ch3_14371036..14371016   9 19.4 Same
Sb03g039090 Ch3_66876720..66876744 Sof.5269.1.S1_at 6 8.1 T–A–T/C–A–C
  Ch3_66876724..66876748   7 12 Same
  Ch3_66876727..66876751   8 17.1 Same
  Ch3_66876730..66876754   9 16.1 Same
  Ch3_66876734..66876758   10 45.8 Same
Sb04g019020 Ch4_44439369..44439345 Sof.3814.1.S1_at 8 21.9 C–T–T
  Ch4_44439366..44439342   9 15.3 Same
  Ch4_44439307..44439289   11 25.5 T–G–T
Sb04g037170 Ch4_66851287..66851311 Sof.151.1.S1_at 8 19.4 G–C–G
Sb05g001680 Ch5_1816812..1816788 Sof.1902.1.S1_s_at 6 33.1 A–G–G
Sb07g005930 Ch7_8393958..8393934 Sof.1190.1.S1_at 8 23.3 T–G–T
Sb08g008320 Ch8_15917006..15917030 SofAffx.1412.1.A1_s_at 2 15.1 T–C–C
Sb08g002250 Ch8_2360967..2360943 Sof.2692.1.S1_at 2 16.8 A–G–A
  Ch8_2360780..2360756   5 22.1 A–G–G
  Ch8_2360760..2360736   6 23.6 T–C–C
Sb09g006050 Ch9_8732113..8732094 SofAffx.1438.1.A1_s_at 3 14.9 C–G–C
  Ch9_8732054..8732030   7 82.5 C–A–C
Sb09g000820 Ch9_624173..624197 Sof.808.1.S1_at 8 29 G–C–G
Sb09g005280 Ch9_6782917..6782941 Sof.5033.1.S1_at 9 15.1 A–G–G
Sb10g007380 Ch10_7220153..7220177 SofAffx.287.1.S1_at 7 14 T–C–C
  1. Same means that a different probe pair recognizes the same SNP
  2. Sc Sugarcane