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Table 1 Assembly Statistics (Commonly Reported Assembly Statistics for Each of the Six BAC Pools)

From: De Novo Next Generation Sequencing of Plant Genomes

  Individual pool statistics
Pool 1 Pool 2 Pool 3 Pool 4 Pool 5 Pool 6
# Scaffolds 15 25 22 9 21 31
N50 scaffold size 518,306 353,691 309,466 407,073 242,868 360,621
Largest scaffold 692,300 727,204 628,772 1,195,083 728,801 769,231
# Contigs in scaffolds 251 328 290 290 361 346
# Contigs 349 483 484 369 506 527
N50 contig size 19,948 12,338 15,511 14,645 11,029 10,877
Largest contig 64,379 61,596 76,790 62,004 45,971 54,004
# Titanium reads used in assembly 171,538 134,113 164,319 185,005 133,321 142,414
# Paired ends used in assembly 17,191 13,694 14,713 20,551 23,047 19,544
Total base pair used 62,526,876 46,881,469 60,814,619 66,641,838 47,621,595 53,998,008
Total size 3,422,263 3,100,984 3,354,957 2,990,942 2,978,383 2,786,664
  1. Contig or scaffold N50 is a weighted median statistic such that 50% of the entire assembly is contained in contigs or scaffolds equal to or larger than this value