| |
Individual pool statistics
|
|---|
|
Pool 1
|
Pool 2
|
Pool 3
|
Pool 4
|
Pool 5
|
Pool 6
|
|---|
|
# Scaffolds
|
15
|
25
|
22
|
9
|
21
|
31
|
|
N50 scaffold size
|
518,306
|
353,691
|
309,466
|
407,073
|
242,868
|
360,621
|
|
Largest scaffold
|
692,300
|
727,204
|
628,772
|
1,195,083
|
728,801
|
769,231
|
|
# Contigs in scaffolds
|
251
|
328
|
290
|
290
|
361
|
346
|
|
# Contigs
|
349
|
483
|
484
|
369
|
506
|
527
|
|
N50 contig size
|
19,948
|
12,338
|
15,511
|
14,645
|
11,029
|
10,877
|
|
Largest contig
|
64,379
|
61,596
|
76,790
|
62,004
|
45,971
|
54,004
|
|
# Titanium reads used in assembly
|
171,538
|
134,113
|
164,319
|
185,005
|
133,321
|
142,414
|
|
# Paired ends used in assembly
|
17,191
|
13,694
|
14,713
|
20,551
|
23,047
|
19,544
|
|
Total base pair used
|
62,526,876
|
46,881,469
|
60,814,619
|
66,641,838
|
47,621,595
|
53,998,008
|
|
Total size
|
3,422,263
|
3,100,984
|
3,354,957
|
2,990,942
|
2,978,383
|
2,786,664
|
- Contig or scaffold N50 is a weighted median statistic such that 50% of the entire assembly is contained in contigs or scaffolds equal to or larger than this value
