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Rice

Table 1 Signal Distribution of Alternative Transcripts in the NSF45K Light vs. Dark Experiment

From: Analysis of Alternatively Spliced Rice Transcripts Using Microarray Data

Primary oligoa

Number of alternative oligos in each log2-valueb

Conditions of upregulation

# of loci

# of alternative oligos

>1.0

0.5 to 1

0.1 to 0.5

0.1 to −0.1

(−0.1) to (−0.5)

−0.5 to (−1.0)

<(−1.0)

Light (log2 > 1)

243

282

160

46

55

13

7

1

0

Dark (log2 < −1)

264

349

2

9

25

37

68

79

129

  1. Analysis of potential alternatively spliced loci for which at least one oligo (i.e., transcript) showed a twofold change in expression (|log2(light/dark)| ≥1)
  2. aThe primary oligo was set as the probe for each locus that showed the highest absolute fluorescence on the array
  3. bDifferential expression, as indicated by log2 (light/dark) values for alternative nonprimary oligos for the differentially expressed loci
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