Fig. 5

Identification of alternatively spliced transcripts that show opposite differential regulation relative to the primary transcript when inoculated by M. grisea from Affymetrix rice array data [29]. Expression patterns of alternatively spliced transcripts for nine loci as indicated by 18 oligo probe sets. The red–green columns indicate the differential expression of each oligo set for treatment with M. grisea over control. Log ₂ _FR13/MOCK_3d_Nipponbare indicates the log₂ transformed ratio of spot intensity in FR13 3 dpi over spot intensity in Mock 3 dpi, and Log ₂ _FR13/MOCK_4d_Nipponbare indicates the log₂ transformed ratio of spot intensity in FR13 4 dpi over spot intensity in Mock 4 dpi. The blue–yellow columns indicate the log₂-values of the absolute signal intensities. Mock 3 dpi indicates the average log₂ transformed expression level in control Nipponbare leaves treated with gelatin solution 3 days postinoculation (dpi); Mock 4 dpi indicates log₂ transformed expression level in controls leaves 4 dpi; FR13 3 dpi indicates log₂ transformed expression level in Nipponbare leaves treated with M. grisea (virulent isolate FR13) in gelatin solution 3 dpi; FR13 4 dpi indicates log₂ transformed expression level in Nipponbare leaves treated with M. grisea 4 dpi. Affy_oligo id indicates the name of oligo sets in Affymetrix array. Data used in this figure are given in Table S3. See the Fig. 2 legend for further information.