Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza

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Table 1 Experimental Materials and Genomic Sequence Obtained from the Hd6 Region in this Study

Species	Genome	Variety or accession	Origin	Source	BAC library	BAC clone	Sequence (bp)	DDBJ accession
O. sativa ssp. indica	AA	Kasalath	India	NIAS	RGP	K0097D05	12,282	AB435660
		Shuusoushu	China	NIAS	RGP^a	SYU0034H12	11,340	AB435661
		93–11	China	BGI	–	–	7,288	AAAA02011074
O. sativa ssp. japonica	AA	Nipponbare	Japan	NIAS	–	–	7,288	AP008209
O. sativa ssp. japonica	AA	Khau Mac Kho	Vietnam	NIAS	RGP^a	KMK0022M06	8,301	AB435662
O. rufipogon	AA	W0106	India	NIG	AGI	OR_BBa0003J21	8,863	AB435663
		W0574	Malaysia	IRRI	AGI	OR_CBa0040J04	9,376	AB435664
		W1943	China	NIG	RGP^a	ORUFIa0048M08	9,395	AB435665
O. glaberrima	AA	IRGC104038	Senegal	IRRI	RGP^a	Ogla0003I24	10,500	AB435666
O. barthii	AA	W1588	Cameroon	NIG	RGP^a	OBARTa0009O14	12,040	AB435668
O. glumaepatula	AA	IRGC105688	Brazil	IRRI	RGP^a	Gl0002B01	10,029	AB435667
O. meridionalis	AA	W1625	Australia	NIG	RGP^a	OMERIa0050H16	9,841	AB435669
O. longistaminata	AA	W1413	Sierra Leone	NIG	RGP^a	OLONGa0047D09	12,251	AB435670
O. punctata	BB	IRGC105690	Bangladesh	IRRI	AGI	OP_Ba0068J23	12,470	AB435671
O. minuta	BBCC	IRGC101141	Philippines	IRRI	AGI	OM_Ba0079N19	10,730	AB435672
O. minuta	BBCC					OM_Ba0144F13	7,554	AB435673
O. officinalis	CC	IRGC100896	Thailand	IRRI	AGI	OO_Ba0020M07	11,130	AB435674
O. alta	CCDD	IRGC105143	S. America	IRRI	AGI	OA_BBa0001D06	13,060	AB435675
O. australiensis	EE	W0008	Australia	NIG	AGI	OA_ABa0021P01	10,706	AB435676
O. brachyantha	FF	IRGC101232	Africa	IRRI	AGI	OB_Ba0069K07	10,780	AB435677
O. granulata	GG	IRGC102118	Thailand	IRRI	AGI	OG_Ba0074B16	13,359	AB435678