Screen of Genes Linked to High-Sugar Content in Stems by Comparative Genomics

Calviño, Martín; Bruggmann, Rémy; Messing, Joachim

doi:10.1007/s12284-008-9012-9

Rice

Table 1 List of “Trait-Specific” Genes that Are Syntenic with Rice

From: Screen of Genes Linked to High-Sugar Content in Stems by Comparative Genomics

Gene^a	Rice	Sorghum	Expression^b
Starch and sucrose metabolism
Hexokinase 8	Os01g0190400	Sb03g003190.1^c	2.3
Hexokinase 8	Os05g0187100	Sb09g005840.1
Carbohydrate phosphorylase	Os01g0851700	Sb03g040060.1^c	1.2
Sucrose synthase 2	Os03g0401300	Sb01g033060.1 ^c	−1.3
Sucrose synthase 2	Os07g0616800
Fructokinase-2	Os08g0113100	Sb07g001320.1^c	−1.7
Sorbitol dehydrogenase	Os08g0545200	Sb07g025220.1^c	1.6
Sugar binding
d-mannose binding lectin	Os06g0165200	Sb10g022730.1^c	2
CO₂ assimilation
NADP-dependent malic enzyme	Os01g0723400	Sb03g033250.1 ^c	2
Cell-wall-related
LysM domain protein/cell wall catabolism	Os03g0110600	Sb01g049890.1^c	1.2
Cellulose synthase-7	Os03g0837100	Sb01g002050.1 ^c	−1
Cellulose synthase-1	Os05g0176100	Sb09g005280.1 ^c	−1.1
Cellulose synthase-9	Os07g0208500	Sb02g006290.1 ^c	−1.1
Cellulose synthase-9	Os03g0808100	Sb01g004210.1
Cellulose synthase catalytic subunit 12	Os09g0422500	Sb02g025020.1^c	−4.7
Alpha-galactosidase precursor	Os10g0493600	Sb01g018400.1^c	−1.8
Beta-galactosidase 3 precursor	Os01g0875500	Sb03g041450.1^c	−2.4
Beta-galactosidase 3 precursor	Os05g0428100	Sb03g041450.1
Cinnamoyl CoA reductase	Os08g0441500	Sb07g021680.1^c	−2.9
Cinnamoyl CoA reductase	Os09g0419200	Sb10g005700.1
Laccase	Os01g0842400	Sb03g039520.1	−3.5
4-Coumarate coenzyme A ligase	Os02g0177600	Sb04g005210.1^c	−3.7
4-Coumarate coenzyme A ligase	Os06g0656500	Sb10g026130.1
Fasciclin domain	Os03g0788600	Sb01g005770.1^c	−1.75
Fasciclin domain	Os07g0160600	Sb02g003410.1
Fasciclin-like protein FLA15	Os05g0563600	Sb09g028490.1^c	−6.5
Caffeoyl-CoA O -methyltransferase 2	Os06g0165800	Sb10g004540.1 ^c	−2.15
Caffeoyl-CoA O -methyltransferase	Os08g0498100	Sb07g028530.1 ^c	−5.3
Caffeoyl-CoA O-methyltransferase	Os09g0481400	Sb02g027930.1

In boldface: sorghum genes that correspond to sugarcane probe set IDs previously reported by [6]
^aParalogs in italics
^bMean Log2 Ratio of sweet versus grain sorghum
^cSorghum gene to which a sugarcane probe set was mapped

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