Rapid and Differential Proliferation of the Ty3-Gypsy LTR Retrotransposon Atlantys in the Genus Oryza

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Table 2 Oryza Random Sheared Library Statistics

Species	Genome type	Genome size (in MBp)	Nr. of sequences	Reads mean length	Mbp sequenced	% genome sequenced
O. nivara	AA	448	3,103	657	2.04	0.46
O. rufipogon	AA	439	2,555	751	1.92	0.44
O. glaberrima	AA	357	3,494	767	2.68	0.75
O. punctata	BB	425	3,144	613	1.93	0.45
O. officinalis	CC	651	4,848	792	3.84	0.59
O. minuta	BBCC	1124	9,459	760	7.19	0.64
O. alta	CCDD	1008	7,538	758	5.58	0.55
O. australiensis	EE	965	7,359	636	4.68	0.48
O. brachyantha	FF	362	3,377	705	2.38	0.66
O. granulata	GG	882	6,688	665	4.45	0.5
O. ridleyi	HHJJ	1283	11,091	720	8.16	0.64
O. coarctata	HHKK	1283*	9,524	736	6.86	0.53

All genome size estimates are from [2] except those of O. glaberrima [AA] and O. minuta [GG] which are from [32]. The genome size for O. coarctata [HHKK] is a rough estimate because the real genome size of this species is unknown. We, therefore, used the value estimated for O. ridleyi [HHJJ; 1,283 Mbp], which is also an allotetraploid species and shares the HH genome type with O. coarctata.