Skip to main content

Table 2 Oryza Random Sheared Library Statistics

From: Rapid and Differential Proliferation of the Ty3-Gypsy LTR Retrotransposon Atlantys in the Genus Oryza

Species Genome type Genome size (in MBp) Nr. of sequences Reads mean length Mbp sequenced % genome sequenced
O. nivara AA 448 3,103 657 2.04 0.46
O. rufipogon AA 439 2,555 751 1.92 0.44
O. glaberrima AA 357 3,494 767 2.68 0.75
O. punctata BB 425 3,144 613 1.93 0.45
O. officinalis CC 651 4,848 792 3.84 0.59
O. minuta BBCC 1124 9,459 760 7.19 0.64
O. alta CCDD 1008 7,538 758 5.58 0.55
O. australiensis EE 965 7,359 636 4.68 0.48
O. brachyantha FF 362 3,377 705 2.38 0.66
O. granulata GG 882 6,688 665 4.45 0.5
O. ridleyi HHJJ 1283 11,091 720 8.16 0.64
O. coarctata HHKK 1283* 9,524 736 6.86 0.53
  1. All genome size estimates are from [2] except those of O. glaberrima [AA] and O. minuta [GG] which are from [32]. The genome size for O. coarctata [HHKK] is a rough estimate because the real genome size of this species is unknown. We, therefore, used the value estimated for O. ridleyi [HHJJ; 1,283 Mbp], which is also an allotetraploid species and shares the HH genome type with O. coarctata.