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  1. Tongil (IR667-98-1-2) rice, developed in 1972, is a high-yield rice variety derived from a three-way cross between indica and japonica varieties. Tongil contributed to the self-sufficiency of staple food producti...

    Authors: Backki Kim, Dong-Gwan Kim, Gileung Lee, Jeonghwan Seo, Ik-Young Choi, Beom-Soon Choi, Tae-Jin Yang, Kwang Soo Kim, Joohyun Lee, Joong Hyoun Chin and Hee-Jong Koh
    Citation: Rice 2014 7:22
  2. Iron (Fe) is essential micronutrient for plants and its deficiency as well as toxicity is a serious agricultural problem. The mechanisms of Fe deficiency are reasonably understood, however our knowledge about ...

    Authors: Khurram Bashir, Kousuke Hanada, Minami Shimizu, Motoaki Seki, Hiromi Nakanishi and Naoko K Nishizawa
    Citation: Rice 2014 7:18
  3. Plants have evolved a sensitive defense response system that detects and recognizes various pathogen-associated molecular patterns (PAMPs) (e.g. flagellin) and induces immune responses to protect against invas...

    Authors: Chao Yu, Huamin Chen, Fang Tian, Jan E Leach and Chenyang He
    Citation: Rice 2014 7:20
  4. The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in the mitochondria. Plant SUV3 has not yet been characterized in detail. However, the Arabidopsis ortholog of SUV3 (AT4G1479...

    Authors: Ranjan Kumar Sahoo, Mohammad Wahid Ansari, Renu Tuteja and Narendra Tuteja
    Citation: Rice 2014 7:17
  5. Salinity is a stressful environmental factor that limits the productivity of crop plants, and roots form the major interface between plants and various abiotic stresses. Rice is a salt-sensitive crop and its p...

    Authors: Yi Tu, Aiming Jiang, Lu Gan, Mokter Hossain, Jinming Zhang, Bo Peng, Yuguo Xiong, Zhaojian Song, Detian Cai, Weifeng Xu, Jianhua Zhang and Yuchi He
    Citation: Rice 2014 7:15
  6. Rice seed proteins contain antigens that provoke allergic responses in some individuals with food allergy, particularly in those with cereal allergy, and these antigens can elicit clinical symptoms such as ecz...

    Authors: Yuko Ogo, Yuhya Wakasa, Kana Hirano, Atsuo Urisu, Tsukasa Matsuda and Fumio Takaiwa
    Citation: Rice 2014 7:19
  7. Aspartic protease (APs) plays important roles in plant growth, development and biotic and abiotic stresses. We previously reported that the expression of a rice AP gene (OsAP77, Os10g0537800) was induced by probe...

    Authors: Md Mahfuz Alam, Hidemitsu Nakamura, Hiroaki Ichikawa, Akio Miyao, Hirohiko Hirochika, Kappei Kobayashi, Naoto Yamaoka and Masamichi Nishiguchi
    Citation: Rice 2014 7:9
  8. High grain yield is one of the most important traits requiring improvement in rice breeding programs. Consequently, the genetic basis of spikelets per panicle (SPP) and grain weight (TGW) have received much re...

    Authors: Dong-Min Kim, Hyun-Sook Lee, Soo-Jin Kwon, Mark Edward Fabreag, Ju-Won Kang, Yeo-Tae Yun, Chong-Tae Chung and Sang-Nag Ahn
    Citation: Rice 2014 7:14
  9. Segregation distortion (SD) is a frequently observed occurrence in mapping populations generated from crosses involving divergent genotypes. In the present study, ten genetic linkage maps constructed from reci...

    Authors: Reflinur, Backki Kim, Sun Mi Jang, Sang-Ho Chu, Yogendra Bordiya, Md Babul Akter, Joohyun Lee, Joong Hyoun Chin and Hee-Jong Koh
    Citation: Rice 2014 7:3
  10. Rice accounts for 43% of staple food production in the Democratic People’s Republic of Korea (DPRK). The most widely planted rice varieties were developed from a limited number of ancestral lines that were rep...

    Authors: HyunJung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jeffrey Doyle, Namrata Singh, Anthony J Greenberg, Yong Jae Won and Susan R McCouch
    Citation: Rice 2014 7:7
  11. The rice interactome, in which a network of protein-protein interactions has been elucidated in rice, is a useful resource to identify functional modules of rice signal transduction pathways. Protein-protein i...

    Authors: Yukichi Fujikawa, Takahiro Nakanishi, Hiroko Kawakami, Kanako Yamasaki, Masa H Sato, Hiroyuki Tsuji, Makoto Matsuoka and Naohiro Kato
    Citation: Rice 2014 7:11
  12. Throughout Asia, including Japan, rice plants are cultivated in a wide range of areas from lowlands to highlands and are frequently exposed to fog, including acid fog. Some physiological studies have shown tha...

    Authors: Kouji Satoh, Shoko Saji, Shoko Ito, Hideyuki Shimizu, Hikaru Saji and Shoshi Kikuchi
    Citation: Rice 2014 7:10
  13. Heat-tolerant rice cultivars have been developed as a countermeasure to poor grain appearance quality under high temperatures. Recent studies showed that elevated CO2 concentrations (E-[CO2]) also reduce grain qu...

    Authors: Yasuhiro Usui, Hidemitsu Sakai, Takeshi Tokida, Hirofumi Nakamura, Hiroshi Nakagawa and Toshihiro Hasegawa
    Citation: Rice 2014 7:6
  14. Rice blast is a destructive disease caused by Magnaporthe oryzae, and it has a large impact on rice production worldwide. Compared with leaf blast resistance, our understanding of panicle blast resistance is limi...

    Authors: Takeaki Ishihara, Yuriko Hayano-Saito, Shinichi Oide, Kaworu Ebana, Nghia Tuan La, Keiko Hayashi, Taketo Ashizawa, Fumihiko Suzuki and Shinzo Koizumi
    Citation: Rice 2014 7:2
  15. Apparent Amylose Content (AAC), regulated by the Waxy gene, represents the key determinant of rice cooking properties. In occidental countries high AAC rice represents the most requested market class but the avai...

    Authors: Chiara Biselli, Daniela Cavalluzzo, Rosaria Perrini, Alberto Gianinetti, Paolo Bagnaresi, Simona Urso, Gabriele Orasen, Francesca Desiderio, Elisabetta Lupotto, Luigi Cattivelli and Giampiero Valè
    Citation: Rice 2014 7:1
  16. Producing rice flour of good quality by dry milling is necessary to reduce milling costs and promote the processed rice food industry. This study was conducted to evaluate the dry milling properties of Suweon ...

    Authors: Young-Jun Mo, Ji-Ung Jeung, Young-Seop Shin, Chul Soo Park, Kyung-Ho Kang and Bo-Kyeong Kim
    Citation: Rice 2013 6:37
  17. Heat is one of the major factors that considerably limit rice production. Nagina 22 (N22) is a deep-rooted, drought and heat tolerant aus rice cultivar. This study reports the characterization of a previously ...

    Authors: Yugandhar Poli, Ramana Kumari Basava, Madhusmita Panigrahy, Vishnu Prasanth Vinukonda, Nageswara Rao Dokula, Sitapathi Rao Voleti, Subrahmanyam Desiraju and Sarla Neelamraju
    Citation: Rice 2013 6:36
  18. Ultra violet radiation leads to accumulation of phytoalexins (PA) in rice (Oryza sativa) which are typically accumulated when the plants are infected with rice blast pathogen Magnaporthe oryzae. Although extensiv...

    Authors: Dhammaprakash Pandhari Wankhede, Kundan Kumar, Pallavi Singh and Alok Krishna Sinha
    Citation: Rice 2013 6:35
  19. A number of QTL studies reported that one genomic region was associated with several traits, indicating linkage and/or pleiotropic effects. The question of pleiotropy versus tight linkage in these studies shou...

    Authors: Xiao Luo, Shi-Dong Ji, Ping-Rong Yuan, Hyun-Sook Lee, Dong-Min Kim, Sangshetty Balkunde, Ju-Won Kang and Sang-Nag Ahn
    Citation: Rice 2013 6:33
  20. The mechanism of iron (Fe) uptake in plants has been extensively characterized, but little is known about how Fe transport to different subcellular compartments affects Fe localization in rice seed. Here, we d...

    Authors: Khurram Bashir, Ryuichi Takahashi, Shamim Akhtar, Yasuhiro Ishimaru, Hiromi Nakanishi and Naoko K Nishizawa
    Citation: Rice 2013 6:31
  21. Root system architecture is an important trait affecting the uptake of nutrients and water by crops. Shallower root systems preferentially take up nutrients from the topsoil and help avoid unfavorable environm...

    Authors: Eiko Hanzawa, Kazuhiro Sasaki, Shinsei Nagai, Mitsuhiro Obara, Yoshimichi Fukuta, Yusaku Uga, Akio Miyao, Hirohiko Hirochika, Atsushi Higashitani, Masahiko Maekawa and Tadashi Sato
    Citation: Rice 2013 6:30
  22. Africa contains a huge diversity of both cultivated and wild rice species. The region has eight species representing six of the ten known genome types. Genetic resources of these species are conserved in vario...

    Authors: Peterson W Wambugu, Agnelo Furtado, Daniel LE Waters, Desterio O Nyamongo and Robert J Henry
    Citation: Rice 2013 6:29
  23. Plants, as sessile organisms experience various abiotic stresses, which pose serious threat to crop production. Plants adapt to environmental stress by modulating their growth and development along with the va...

    Authors: Kundan Kumar, Manu Kumar, Seong-Ryong Kim, Hojin Ryu and Yong-Gu Cho
    Citation: Rice 2013 6:27
  24. The perennial, Oryza rufipogon distributed from Asia to Australia and the annual O. meridionalis indigenous to Australia are AA genome species in the Oryza. However, recent research has demonstrated that the Aust...

    Authors: Masahiro Sotowa, Kenta Ootsuka, Yuu Kobayashi, Yin Hao, Katsunori Tanaka, Katsuyuki Ichitani, Jonathan M Flowers, Michael D Purugganan, Ikuo Nakamura, Yo-Ichiro Sato, Tadashi Sato, Darren Crayn, Bryan Simon, Daniel LE Waters, Robert J Henry and Ryuji Ishikawa
    Citation: Rice 2013 6:26
  25. Flowering time, which is often associated with the length of the growth period in rice, determines the adaptability of a plant to various environments. However, little is known about how flowering-time genes a...

    Authors: Shikai Hu, Guojun Dong, Jie Xu, Yan Su, Zhenyuan Shi, Weijun Ye, Yuanyuan Li, Gengmi Li, Bin Zhang, Jiang Hu, Qian Qian, Dali Zeng and Longbiao Guo
    Citation: Rice 2013 6:24
  26. Chilling stress is a major factor limiting rice production. Rice genotypes differ greatly in their seedling chilling tolerance (CT), which is known to involve differential expression of large numbers of genes ...

    Authors: Xiu-Qin Zhao, Wen-Sheng Wang, Fan Zhang, Ting Zhang, Wen Zhao, Bin-Ying Fu and Zhi-Kang Li
    Citation: Rice 2013 6:23
  27. Cis-acting elements are essential genomic sequences that control gene expression. In higher eukaryotes, a series of cis-elements function cooperatively. However, further studies are required to examine the co-reg...

    Authors: Yusuke Kakei, Yuko Ogo, Reiko N Itai, Takanori Kobayashi, Takashi Yamakawa, Hiromi Nakanishi and Naoko K Nishizawa
    Citation: Rice 2013 6:22
  28. With an increasing world population and a gradual decline in the amount of arable land, food security remains a global challenge. Continued increases in rice yield will be required to break through the barrier...

    Authors: Meijuan Duan, Zhizhong Sun, Liping Shu, Yanning Tan, Dong Yu, Xuewu Sun, Ruifen Liu, Yujie Li, Siyu Gong and Dingyang Yuan
    Citation: Rice 2013 6:21
  29. Accumulation of genome-wide transcriptome data provides new insight on a genomic scale which cannot be gained by analyses of individual data. The majority of rice (O. sativa) species are japonica and indica culti...

    Authors: Ki-Hong Jung, Hyun-Jung Gho, Hoi-Khoanh Giong, Anil Kumar Nalini Chandran, Quynh-Nga Nguyen, HeeBak Choi, Tian Zhang, Wen Wang, Jin-Hyun Kim, Hong-Kyu Choi and Gynheung An
    Citation: Rice 2013 6:19
  30. Bph3, a major brown planthopper (BPH) resistance locus derived from the rice cultivar Rathu Heenati (RH), has been used as a stable donor of traits that improve highly susceptible aromatic rice varieties in Thail...

    Authors: Wintai Kamolsukyunyong, Wissarut Sukhaket, Vinitchan Ruanjaichon, Theerayut Toojinda and Apichart Vanavichit
    Citation: Rice 2013 6:18
  31. The rice transcription factors IDEF1, IDEF2, and OsIRO2 have been identified as key regulators of the genes that control iron (Fe) uptake, including the biosynthesis of mugineic acid-family phytosiderophores (...

    Authors: Reiko Nakanishi Itai, Yuko Ogo, Takanori Kobayashi, Hiromi Nakanishi and Naoko K Nishizawa
    Citation: Rice 2013 6:16
  32. Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in associatio...

    Authors: Palitha Dharmawardhana, Liya Ren, Vindhya Amarasinghe, Marcela Monaco, Jim Thomason, Dean Ravenscroft, Susan McCouch, Doreen Ware and Pankaj Jaiswal
    Citation: Rice 2013 6:15
  33. Next-generation sequencing and ‘omics’ platforms are used extensively in plant biology research to unravel new genomes and study their interactions with abiotic and biotic agents in the growth environment. Des...

    Authors: Mamatha Hanumappa, Justin Preece, Justin Elser, Denise Nemeth, Gina Bono, Kenny Wu and Pankaj Jaiswal
    Citation: Rice 2013 6:14
  34. Bacterial grain rot (BGR), caused by the bacterial pathogen Burkholderia glumae, is a destructive disease of rice. Because BGR tends to be highly affected by environmental conditions such as temperature and humid...

    Authors: Ritsuko Mizobuchi, Hiroyuki Sato, Shuichi Fukuoka, Takanari Tanabata, Seiya Tsushima, Tokio Imbe and Masahiro Yano
    Citation: Rice 2013 6:13

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