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  1. Content type: Article

    Germin-like protein (GLP) markers were associated with quantitative trait loci (QTL) for resistance to the rice blast pathogen, Magnaporthe oryzae in multiple rice (Oryza sativa) mapping populations. Twelve paral...

    Authors: Rebecca M. Davidson, Patricia M. Manosalva, Jacob Snelling, Myron Bruce, Hei Leung and Jan E. Leach

    Citation: Rice 2010 3:9038

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  2. Content type: Article

    WRKY transcription factors regulate diverse plant processes including responses to biotic stresses. Our previous studies indicate that OsWRKY62, an OsWRKY IIa subfamily member, functions as a negative regulato...

    Authors: Ying Peng, Laura E. Bartley, Patrick Canlas and Pamela C. Ronald

    Citation: Rice 2010 3:9039

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  3. Content type: Article

    Carbon isotope discrimination (∆13C) is considered as an index of leaf-level water use efficiency, an important objective for plant breeders seeking to conserve water resources. We report in rice a genetic analys...

    Authors: Dominique This, Jonathan Comstock, Brigitte Courtois, Yunbi Xu, Nourollah Ahmadi, Wendy M. Vonhof, Christine Fleet, Tim Setter and Susan McCouch

    Citation: Rice 2010 3:9036

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  4. Content type: Article

    The beet armyworm (Spodoptera exigua) and the rice water weevil (Lissorhoptrus oryzophilus) are two important insect pests in rice production. To identify insect-responsive genes in rice, we performed a deep tran...

    Authors: R. C. Venu, M. Sheshu Madhav, M. V. Sreerekha, Kan Nobuta, Yuan Zhang, Peter Carswell, Michael J. Boehm, Blake C. Meyers, Kenneth L. Korth and Guo-Liang Wang

    Citation: Rice 2010 3:9037

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  5. Content type: Article

    Diseases caused by fungal and bacterial pathogens like Magnaporthe oryzae and Xanthomonas oryzae pv. oryzae are responsible for considerable yield loss. Up to now, in rice, the modification of the expression of m...

    Authors: Amandine Delteil, Jie Zhang, Philippe Lessard and Jean-Benoit Morel

    Citation: Rice 2010 3:9035

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  6. Content type: Article

    A secreted cellulase of Xanthomonas oryzae pv. oryzae induces innate immune responses in rice including a hypersensitive response (HR) like reaction. Microarray analysis was conducted using RNA isolated 12 h foll...

    Authors: Gopaljee Jha, Hitendra Kumar Patel, Madhumita Dasgupta, Ramesh Palaparthi and Ramesh V. Sonti

    Citation: Rice 2009 3:9033

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  7. Content type: Article

    Transcriptional profiling has identified genes associated with adaptive responses to phosphorus (P) deficiency; however, distinguishing stress response from tolerance has been difficult. We report gene express...

    Authors: Juan Pariasca-Tanaka, Kouji Satoh, Terry Rose, Ramil Mauleon and Matthias Wissuwa

    Citation: Rice 2009 2:9032

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  8. Content type: Article

    In humans, iron (Fe) and zinc (Zn) deficiencies result in major worldwide health problems. Transgenic technologies to produce Fe- and Zn-biofortified rice varieties offer a promising potential solution. Nicoti...

    Authors: Hiroshi Masuda, Kanako Usuda, Takanori Kobayashi, Yasuhiro Ishimaru, Yusuke Kakei, Michiko Takahashi, Kyoko Higuchi, Hiromi Nakanishi, Satoshi Mori and Naoko K. Nishizawa

    Citation: Rice 2009 2:9031

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  9. Content type: Article

    During the last 10 years, a large number of quantitative trait loci (QTLs) controlling rice root morphological parameters have been detected in several mapping populations by teams interested in improving drou...

    Authors: Brigitte Courtois, Nourollah Ahmadi, Farkhanda Khowaja, Adam H. Price, Jean-François Rami, Julien Frouin, Chantal Hamelin and Manuel Ruiz

    Citation: Rice 2009 2:9028

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  10. Content type: Article

    To understand the basis of broad-spectrum disease resistance in rice, we isolated a gamma-ray-induced IR64 mutant G978 that showed enhanced resistance to blast and bacterial blight. The resistance is quantitat...

    Authors: Ma. Reina Suzette Madamba, Nobuko Sugiyama, Alicia Bordeos, Ramil Mauleon, Kouji Satoh, Marietta Baraoidan, Shoshi Kikuchi, Ko Shimamoto and Hei Leung

    Citation: Rice 2009 2:9027

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  11. Content type: Article

    Hybrid weakness is a reproductive barrier. In rice, the hybrid weakness caused by two complementary genes––HWC1 and HWC2––has been surveyed extensively. However, their gene products and the molecular mechanism th...

    Authors: Tsutomu Kuboyama, Toshiya Saito, Takashi Matsumoto, Jianzhong Wu, Hiroyuki Kanamori, Satoru Taura, Muneharu Sato, Wataru Marubashi and Katsuyuki Ichitani

    Citation: Rice 2009 2:9026

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  12. Content type: Article

    The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequ...

    Authors: Steve Rounsley, Pradeep Reddy Marri, Yeisoo Yu, Ruifeng He, Nick Sisneros, Jose Luis Goicoechea, So Jeong Lee, Angelina Angelova, Dave Kudrna, Meizhong Luo, Jason Affourtit, Brian Desany, James Knight, Faheem Niazi, Michael Egholm and Rod A. Wing

    Citation: Rice 2009 2:9025

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  13. Content type: Article

    Rice oxalate oxidase genes (OXO) may play a role in resistance to Magnaporthe oryzae. Genome analyses showed four tandemly duplicated OXO genes, OsOXO1OsOXO4, which mapped to a blast resistance QTL in chromosome...

    Authors: Maria Gay C. Carrillo, Paul H. Goodwin, Jan E. Leach, Hei Leung and Casiana M. Vera Cruz

    Citation: Rice 2009 2:9024

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  14. Content type: Article

    Although the genetic diversity of rice germplasm has been well characterized globally, few studies have taken an in-depth view of a large number of rice landraces on a local scale. To better understand the rel...

    Authors: Michael J. Thomson, Nicholas R. Polato, Joko Prasetiyono, Kurniawan R. Trijatmiko, Tiur S. Silitonga and Susan R. McCouch

    Citation: Rice 2009 2:9023

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  15. Content type: Brief Communication

    Alternative splicing creates a diversity of gene products in higher eukaryotes. Twenty-five percent (1,583/6,371) of predicted alternatively spliced transcripts can be detected using the NSF45K rice whole-geno...

    Authors: Ki-Hong Jung, Laura E. Bartley, Peijian Cao, Patrick E. Canlas and Pamela C. Ronald

    Citation: Rice 2008 2:9020

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  16. Content type: Article

    Heading date determines rice’s adaptation to its area and cropping season. We analyzed the molecular evolution of the Hd6 quantitative trait locus for photoperiod sensitivity in a total of 20 cultivated varieties...

    Authors: Hiroko Yamane, Tomoko Ito, Harumi Ishikubo, Masaki Fujisawa, Harumi Yamagata, Kozue Kamiya, Yukiyo Ito, Masao Hamada, Hiroyuki Kanamori, Hiroshi Ikawa, Yuichi Katayose, Jianzhong Wu, Takuji Sasaki and Takashi Matsumoto

    Citation: Rice 2008 2:9019

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  17. Content type: Article

    Plant roots have a large range of functions, including acquisition of water and nutrients, as well as structural support. Dissecting the genetic and molecular mechanisms controlling rice root development is cr...

    Authors: J. Rebouillat, A. Dievart, J. L. Verdeil, J. Escoute, G. Giese, J. C. Breitler, P. Gantet, S. Espeout, E. Guiderdoni and C. Périn

    Citation: Rice 2008 2:9016

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  18. Content type: Article

    Coordinated transcriptional modulation of large gene sets depends on the combinatorial use of cis-regulatory motifs in promoters. We postulate that promoter content similarities are diagnostic for co-expressing g...

    Authors: Stuart Meier, Chris Gehring, Cameron Ross MacPherson, Mandeep Kaur, Monique Maqungo, Sheela Reuben, Samson Muyanga, Ming-Der Shih, Fu-Jin Wei, Samart Wanchana, Ramil Mauleon, Aleksandar Radovanovic, Richard Bruskiewich, Tsuyoshi Tanaka, Bijayalaxmi Mohanty, Takeshi Itoh…

    Citation: Rice 2008 1:9017

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  19. Content type: Review

    The increasing world population and global climate change have made optimizing crop plant return both crucial and urgent. Furthermore, improved understanding of crop yield potential as well as the implementati...

    Authors: Xian-Jun Song and Motoyuki Ashikari

    Citation: Rice 2008 1:9018

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  20. Content type: Review

    Recently, a dual or multiple origin of domesticated rice has been the prevailing opinion among rice scientists because rice is clearly differentiated into two major varietal groups, indica and japonica, and se...

    Authors: Duncan A. Vaughan, Bao-Rong Lu and Norihiko Tomooka

    Citation: Rice 2008 1:9000

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  21. Content type: Article

    Metabolomics is a recently developed technology for comprehensive analysis of metabolites in organisms. Plant metabolites that are produced for the growth, development, and chemical defense of plants against c...

    Authors: Akira Oikawa, Fumio Matsuda, Miyako Kusano, Yozo Okazaki and Kazuki Saito

    Citation: Rice 2008 1:9009

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  22. Content type: Review

    Regulatory small RNAs (approximately 20 to 24 nt in length) are produced through pathways that involve several key evolutionarily conserved protein families; the variants of these proteins found in plants are ...

    Authors: Stacey A. Simon, Jixian Zhai, Jia Zeng and Blake C. Meyers

    Citation: Rice 2008 1:9008

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  23. Content type: Article

    Increasing the iron (Fe) and zinc (Zn) concentrations of staple foods, such as rice, could solve Fe and Zn deficiencies, which are two of the most serious nutritional problems affecting humans. Mugineic acid f...

    Authors: Hiroshi Masuda, Motofumi Suzuki, Kendi Claudio Morikawa, Takanori Kobayashi, Hiromi Nakanishi, Michiko Takahashi, Masahiko Saigusa, Satoshi Mori and Naoko K. Nishizawa

    Citation: Rice 2008 1:9007

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  24. Content type: Review

    Flowering time is a key trait for geographical and seasonal adaptation of plants and is an important consideration for rice breeders. Recently identified genetic factors provide new insights into this complex ...

    Authors: Hiroyuki Tsuji, Shojiro Tamaki, Reina Komiya and Ko Shimamoto

    Citation: Rice 2008 1:9005

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  25. Content type: Article

    The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative has revised the gene nomenclature system for rice (Oryza) to take advantage of the completion of the rice gen...

    Authors: Susan R. McCouch

    Citation: Rice 2008 1:9004

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  26. Content type: Brief Communication

    Opportunities abound to apply crop science to solving many of the world’s food problems. International agricultural research centers (IARCs) provide a window through which students can see the need for improve...

    Authors: Ronald L. Phillips, Noel P. Magor, David Shires, Hei Leung, Susan R. McCouch and Duncan Macintosh

    Citation: Rice 2008 1:9003

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  27. Content type: Article

    Here, we present the results of a comprehensive study of the distribution, evolution, heterogeneity, and phylogenetic relationships of the Ty3-Gypsy Atlantys long terminal repeat retrotransposable element family ...

    Authors: Andrea Zuccolo, Jetty S. S. Ammiraju, HyeRan Kim, Abhijit Sanyal, Scott Jackson and Rod A. Wing

    Citation: Rice 2008 1:9002

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  28. Content type: Editorial

    Research into rice—the world’s most important food crop—is crucial for the development of technologies that will increase productivity for farmers who rely on rice for their livelihood. This is particularly th...

    Authors: Robert S. Zeigler and Adam Barclay

    Citation: Rice 2008 1:9001

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