Table 2 List of candidate genes associated with SNPs from the yield-related mycobiota
From: Genetic Mapping of the Root Mycobiota in Rice and its Role in Drought Tolerance
Locusa | SNP | RDA-GWAS | Description | IC4R database* | RiceXPro database** |
|---|---|---|---|---|---|
LOC_Os01g10320 | Chr1pos5498898.1 | Control | HD-Zip protein | No data | No data |
LOC_Os01g10350 | Chr1pos5498898.1 | Control | MPPN_protein | No data | No data |
LOC_Os01g10370 | Chr1pos5498898.1 | Control | AP2 protein | 1 FPKM (root) | 4 (+ ABA leaf); 1 (+ JA leaf); − 2.5 (+ M.oryzae root/leaf) |
LOC_Os01g10440 | Chr1pos5498898.1 | Control | Xylosyltransferase | FPKM < 1 | 4 (+ ABA root); 4 (+ JA root); 2.5 (+ M.oryzae root); 3.5 (+ M.oryzae leaf) |
LOC_Os01g10450 | Chr1pos5498898.1 | Control | Kinase | no data | No data |
LOC_Os01g10470 | Chr1pos5530841.1 | Control | RALFL17 | FPKM < 1 | No significant differences |
LOC_Os01g10480 | Chr1pos5530841.1 | Control | Plastocyanin | FPKM < 1 | No data |
LOC_Os01g10490 | Chr1pos5530841.1 | Control | Keratin type I protein | No data | No data |
LOC_Os01g10504 | Chr1pos5530841.1 | Control | OsMADS3 | No data | No data |
LOC_Os01g10550 | Chr1pos5530841.1 | Control | Defensin (DEFL) | FPKM < 1 | No data |
LOC_Os04g06790 | Chr4pos3632808.1 | Drought | Dioxygenase | 14 FPKM (root) | No significant differences |
LOC_Os04g06860 | Chr4pos3632808.1 | Drought | Peroxidase | No data | No data |