Table 1 List of SNPs associated with fungal sequence clusters
From: Genetic Mapping of the Root Mycobiota in Rice and its Role in Drought Tolerance
Locusa | SNP | OTU | Taxonomy | OTU yield effect | Description | IC4R database* | RiceXPro database** |
|---|---|---|---|---|---|---|---|
LOC_Os01g24060 | Chr1pos13629118.1 | OTU_0015 | Cladochytriaceae fam | Positive | Importin subunit | FPKM < 1 |  − 3.5 (+ X.oryzae leaf) |
LOC_Os02g43220 | Chr2pos26097336.1 | OTU_0002 | Ceratosphaeria spp | Positive | Polyamine oxidase | FPKM < 1 | 1 (+ M.oryzae leaf)  − 2.5 (+ ABA root);  − 4 |
LOC_Os04g31410 | Chr4pos18765756.1 | OTU_0019 | Rhizophydiales ord | Negative | RALFL | 6 FPKM (root) | (+ JA root);  − 3 (+ M.oryzae root) |
LOC_Os04g35020 | Chr4pos21345052.1 | OTU_0011 | Boudiera spp. | Positive | Cellulose synthase CSLH2 | FPKM < 1 |  − 1 (+ M.oryzae root) |
LOC_Os04g35060 | Chr4pos21345052.1 | OTU_0011 | Boudiera spp. | Positive | Nicotinate phosphoribosyltransfer ase | 20 FPKM (leaf); 14 FPKM (root) | 5 (+ JA root); 1.5 (+ M.oryzae root) |
LOC_Os04g35140 | Chr4pos21345052.1 | OTU_0011 | Boudiera spp. | Positive | Subtilisin | 3 FPKM (leaf); 5 FPKM (root) | 1 (+ JA root); 3 (+ JA leaf); 2 (+ M.oryzae leaf);  − 5 (+ X.oryzae leaf);  − 2 (+ ABA root) |
LOC_Os02g43250 | Chr2pos26097336.1 | OTU_0002 | Ceratosphaeria spp | Positive | Kinase | 7 FPKM (root, -Pi) | 1 (+ ABA root);  − 1.5 (+ M.oryzae root) |
LOC_Os10g12620 | Chr10pos7061662.1 | OTU_0007 | Cladosporium spp. | No effect | Kinase | 4 FPKM (root) | No data |
LOC_Os04g31250 | Chr4pos18765756.1 | OTU_0019 | Rhizophydiales ord | Negative | Defensin (DEFL) | 2 FPKM (leaf) |  − 1 (+ JA root, leaf) |
LOC_Os10g28970 | Chr10pos15139435.1 | OTU_0019 | Rhizophydiales ord | Negative | Bric-a-brac/Tramtrack (BTB/POZ) | 4 FPKM (root) |  − 1 (+ JA root),  − 2 (+ JA leaf),  − 9 (+ X.oryzae leaf) |
LOC_Os07g27580 | Chr7pos16162723.1 | OTU_0001 | Chaetomium spp. | Negative | Haloacid dehalogenase (HAD) phosphatase | No data | No data |
LOC_Os04g31330 | Chr4pos18765756.1 | OTU_0019 | Rhizophydiales ord | Negative | Exo70 exocyst complex | 20 FPKM (leaf) |  − 1 (+ X.oryzae leaf) |