Independent loci under selection | Genetic group involved | DTHD QTLs (2) | DTHD genes (3) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
N° | Type | Nb of SNP (1) | Chr | Start | End | Nb | Known name | MSU Identity | Name | GRP | Reference | |
1 | M2 | 2 | chr01 | 3,930,523 | 4,504,261 | Og and Osj | 1 | Â | LOC_Os01g08700 | OsGI | 1 | Izawa et al. (2011) |
2 | M2 | 1 | chr01 | 5,540,432 | 6,040,432 | Og | 14 | dth1.1, QHd1a, QHd1a | LOC_Os01g10590 | OsFTL8 | 1 | Zhang et al. (2020) |
3 | M2 | 9 | chr01 | 18,423,679 | 19,143,461 | Og | 2 | Â | Â | Â | Â | Â |
4 | M1 | 2 | chr02 | 6,762,905 | 7,267,332 | Osj | 4 | Â | Â | Â | Â | Â |
5 | M2 | 1 | chr02 | 24,604,636 | 25,104,636 | Og | 12 | qHD-2, QHd2a | LOC_Os02g41550 | OsCRY2 | 1 | Hirose et al. (2006) |
6 | M2 | 1 | chr03 | 5,079,703 | 5,579,703 | Og | 15 | dth3.1, QHd3b | Â | Â | Â | Â |
7 | M2 | 3 | chr03 | 10,132,774 | 12,145,360 | Og | 6 | Hd8, dth3.1 | LOC_Os03g19480 | OsSWN; SDG718 | 2 | Liu et al. (2014) |
7 | M2 | 3 | chr03 | 10,132,774 | 12,145,360 | Og | 6 | Hd8, dth3.1 | LOC_Os03g19590 | OsPHYB | 2 | Ishikawa et al. (2011) |
8 | M1 | 4 | chr04 | 0 | 827,020 | Og and Osj | 1 | qDTH-4 | Â | Â | Â | Â |
9 | M1 | 9 | chr04 | 1,085,381 | 3,005,652 | Osj | 12 | qDTH-4, QHd4 | Â | Â | Â | Â |
10 | M2 | 4 | chr04 | 3,993,589 | 4,670,203 | Og and Osj | 0 | Â | LOC_Os04g08034 | OsEMF2 | 3 | Luo et al. (2009) |
11 | M2 | 1 | chr04 | 32,129,645 | 32,629,645 | Og | 2 | dth4.2 | Â | Â | Â | Â |
12 | M2 | 6 | chr05 | 8,974,371 | 9,788,465 | Og | 2 | Â | Â | Â | Â | Â |
13 | M2 | 15 | chr05 | 14,743,007 | 16,632,418 | Osj | 2 | qHD-5 | Â | Â | Â | Â |
14 | M2 | 8 | chr06 | 9,422,923 | 10,942,740 | Osj | 3 | Hd1 | LOC_Os06g16370 | Hd1 | 1 | Â |
14 | M2 | 8 | chr06 | 9,422,923 | 10,942,740 | Osj | 3 | Â | LOC_Os06g16390 | OsCLF; SDG711 | 2 | Liu et al. (2014) |
15 | M2 | 1 | chr06 | 11,153,613 | 11,653,613 | Osj | 0 | Â | Â | Â | Â | Â |
16 | M2 | 45 | chr06 | 13,095,417 | 18,074,177 | Og and Osj | 5 | Hd6b, dth6.1 | LOC_Os06g30370 | OsMFT1 | 1 | Gao et al. (2014) |
17 | M2 | 1 | chr07 | 17,212,559 | 17,712,559 | Og | 5 | Â | Â | Â | Â | Â |
18 | M2 | 1 | chr07 | 29,373,622 | 29,873,622 | Og | 6 | Hd2, QTL7c | LOC_Os07g49460 | OsPRR37 | 1 | Hu et al. (2021) |
19 | M2 | 2 | chr08 | 4,860,945 | 5,579,786 | Osj | 3 | Hd-5, dth8 | Â | Â | Â | Â |
20 | M2 | 14 | chr08 | 17,288,523 | 18,502,122 | Osj | 21 | QHd8, aQHd8, qDTH-8 | Â | Â | Â | Â |
21 | M1 | 2 | chr08 | 19,800,834 | 20,305,131 | Og | 2 | qDTH-8 | Â | Â | Â | Â |
22 | M2 | 1 | chr08 | 23,308,242 | 23,808,242 | Og | 2 | qDTH-8 | LOC_Os08g37490 | OsGF14a | 3 | Liu et al. (2019) |
23 | M2 | 1 | chr09 | 14,585,036 | 15,085,036 | Og | 3 | QHd9, FLTQ3 | Â | Â | Â | Â |
24 | M1 | 2 | chr09 | 19,597,853 | 21,078,706 | Og and Osj | 18 | qHDD9-1, qDTH-9 | LOC_Os09g33850 | OsFTL4 | 3 | Fang et al. (2019) |
24 | M1 | 2 | chr09 | 19,597,853 | 21,078,706 | Og and Osj | 18 | qHDD9-1, qDTH-9 | LOC_Os09g34070 | OsFPA | 2 | Mouradov et al. (2002) |
24 | M1 | 2 | chr09 | 19,597,853 | 21,078,706 | Og and Osj | 18 | qHDD9-1, qDTH-9 | LOC_Os09g36220 | OsPRR95 | 1 | Murakami et al. (2005) |
25 | M2 | 2 | chr09 | 22,453,022 | 22,953,023 | Og | 1 | qDTH-9 | Â | Â | Â | Â |
26 | M1 | 3 | chr11 | 3,400,294 | 3,922,487 | Osj | 1 | dth11.1 | Â | Â | Â | Â |
27 | M2 | 1 | chr11 | 23,361,713 | 23,861,713 | Osj | 2 | QHd11 | Â | Â | Â | Â |
28 | M2 | 14 | chr11 | 25,384,918 | 26,543,152 | Og and Osj | 1 | hd11 | Â | Â | Â | Â |
29 | M2 | 4 | chr11 | 26,942,125 | 27,922,719 | Og | 0 | Â | Â | Â | Â | Â |
30 | M1 | 14 | chr12 | 16,142,460 | 17,897,080 | Og | 12 | dth12.1, QHd12 | Â | Â | Â | Â |
31 | M2 | 1 | chr12 | 20,923,730 | 21,423,730 | Og | 4 | Â | LOC_Os12g34850.1 | OsVRN5; OsVIL2 | 2 | Wang et al. (2013) |