Fig. 3
From: Traces of Introgression from cAus into Tropical Japonica Observed in African Upland Rice Varieties
Local haplotype assignment on chromosome 6 of japonica varieties: Accessions are arranged from top to bottom by geographical subgroups. The base colours are defined according to whether a haplotype window has been assigned to one of these references: japonica (blue), indica (red) and cAus (yellow). However, when the haplotype is shared between two source populations, it is then coloured with the combined colors of its two main components: japonica-indica (purple), japonica-aus (green) and aus-indica (orange). When a haplotype is not group-specific, it is coloured grey. Finally, when the SNPs composing the haplotype window are absent from the source populations, it is shaded in black