Skip to main content

Table 1 List of significant QTLs for all traits

From: Identification of Novel Quantitative Trait Loci for Culm Thickness of Rice Derived from Strong-Culm Landrace in Japan, Omachi

Trait

Chr

QTL name

Inter-node

2020

2021

Known gene

LOD

Physical position(Mbp)

PVE (%)

Additive effecta

LOD

Physical position (Mbp)

PVE (%)

Additive effect

DTH

3

qDTH3

 

28.16

29.09

71.6

11.14 ± 0.62

25.77

29.09

64.8

15.93 ± 1.00

Hd6, Hd16

 

6

qDTH6

 

4.29

0–3.06

5.0

 − 2.77 ± 0.59

3.99

0–3.47

5.1

 − 4.34 ± 0.97

Hd17

CL

3

qCL3

 

14.89

29.09–34.61

51.1

5.85 ± 0.59

9.13

29.09–34.61

43.7

6.43 ± 0.83

Hd6, Hd16

PL

3

qPL3

 

8.33

29.09–34.61

32.9

0.92 ± 0.14

    

Hd6, Hd16

AL

3

qAL3

 

8.18

29.09–34.61

32.5

0.73 ± 0.11

4.13

32.35–36.35

23.3

0.72 ± 0.15

Hd6, Hd16

FL

3

qFL3

 

8.68

29.09–34.61

34.1

3.63 ± 0.52

7.99

29.09–34.61

39.1

4.86 ± 0.69

Hd6, Hd16

PN

3

qPN3

 

3.49

29.09–34.61

13.4

 − 0.47 ± 0.12

4.26

29.09

16.4

 − 0.81 ± 0.18

Hd6, Hd16

 

7

qPN7

     

4.69

24.57–26.64

15.1

 − 0.71 ± 0.16

 

BM

3

qBM3

IV

13.04

29.09–34.61

46.5

157.6 ± 17.4

5.90

29.09–34.61

29.1

103.6 ± 18.4

Hd6, Hd16

   

V

5.75

29.09–34.61

27.9

136.5 ± 24.7

7.19

29.09–34.61

46.5

259.0 ± 38.9

 

BS

3

qBS3

IV

11.81

29.09–36.35

43.3

211.7 ± 25.0

5.90

29.09–34.61

29.1

142.9 ± 25.4

Hd6, Hd16

   

V

3.58

35.13

18.4

97.2 ± 23.0

3.46

35.13

26.0

151.4 ± 35.8

 

CD

3

qCD3

V

    

4.94

21.64–24.26

26.2

0.22 ± 0.04

 
 

7

qCD7-1

IV

    

3.43

1.78–2.36

18.1

0.15 ± 0.04

 
 

7

qCD7-2

IV

3.67

24.57–26.64

16.1

0.14 ± 0.03

     
   

V

3.96

23.82–24.70

17.3

0.18 ± 0.04

3.62

21.94–26.64

15.0

0.16 ± 0.04

 

IL

3

qIL3

IV

    

4.22

27.42–28.65

21.8

0.73 ± 0.16

Hd6, Hd16

   

V

16.38

29.09–34.61

61.3

2.41 ± 0.19

6.63

29.09 –34.61

32.1

1.65 ± 0.27

 
 

7

qIL7

V

3.44

23.69–28.17

8.8

 − 0.93 ± 0.20

     
 

12

qIL12

IV

3.52

19.47–21.48

15.5

 − 0.66 ± 0.16

     

PBN

2

qPBN2

 

3.96

20.98–24.52

14.5

 − 0.36 ± 0.08

     
 

3

qPBN3

 

3.36

6.74–8.23

12.4

0.34 ± 0.08

     
 

5

qPBN5

     

3.41

27.73–28.90

18.0

0.65 ± 0.16

 

SBN

7

qSBN7

 

6.36

24.57–26.64

26.3

2.72 ± 0.47

     

SN

7

qSN7

 

6.00

24.57–26.64

25.0

10.32 ± 1.84

4.17

24.57–26.64

21.6

10.81 ± 2.35

 

TGW

10

qTGW10

     

3.40

20.91

15.2

 − 0.60 ± 0.14

 
 

11

qTGW11

     

4.26

16.96–20.16

30.8

0.85 ± 0.14

 

GL

3

qGL3

     

5.50

29.09–34.61

18.5

 − 0.12 ± 0.02

Hd6, Hd16

 

11

qGL11

 

7.03

17.41–20.16

29.4

0.10 ± 0.02

4.66

16.96–24.25

19.9

0.14 ± 0.03

 

GW

5

qGW5

 

5.33

27.73–28.90

16.0

0.04 ± 0.01

3.90

27.73–28.90

16.6

0.04 ± 0.01

 
 

6

qGW6

 

3.22

26.12–30.97

11.3

0.03 ± 0.01

3.90

25.65–30.97

15.3

0.04 ± 0.01

 
  1. aAdditive effect: Positive value indicates that trait value is higher in the RILs with Omachi allele than in those with Koshihikari allele