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Rice

Table 1 An overview of RNA-Seq data quality

From: Variety-Specific Transcriptional and Alternative Splicing Regulations Modulate Salt Tolerance in Rice from Early Stage of Stress

Sample

Total Read

Mapped read

Mapped rate

Fulllength_Read number

Fulllength_Read ratio (%)

N50

MeanLength

C34_CK1

2,530,965

2,488,745

0.983319

2,138,003

84.47

957

899

C34_CK2

2,983,480

2,932,989

0.983076

2,474,787

82.95

959

898

C34_CK3

4,482,464

4,400,296

0.981669

3,574,214

79.74

920

863

C34_T1

2,693,869

2,629,333

0.976043

2,244,497

83.32

928

873

C34_T2

4,603,445

4,489,252

0.975194

3,862,941

83.91

862

817

C34_T3

2,436,353

2,380,347

0.977012

2,046,120

83.98

892

841

IR29_CK1

2,195,403

2,165,350

0.986311

1,858,616

84.66

946

891

IR29_CK2

4,680,978

4,587,375

0.980004

3,957,768

84.55

836

790

IR29_CK3

2,368,677

2,332,909

0.9849

2,010,540

84.88

944

892

IR29_T1

3,624,356

3,508,433

0.968016

3,066,407

84.61

760

739

IR29_T2

4,590,649

4,493,456

0.978828

3,849,527

83.86

874

826

IR29_T3

4,115,444

4,008,356

0.973979

3,460,835

84.09

824

784

Nona_Bokra_CK1

2,937,994

2,888,265

0.983074

2,504,408

85.24

937

883

Nona_Bokra_CK2

2,682,777

2,641,913

0.984768

2,234,593

83.29

983

919

Nona_Bokra_CK3

2,513,349

2,471,724

0.983438

2,107,576

83.86

889

840

Nona_Bokra_T1

2,235,032

2,192,326

0.980892

1,893,180

84.70

928

876

Nona_Bokra_T2

4,131,432

4,069,107

0.984914

3,292,952

79.70

984

926

Nona_Bokra_T3

4,153,922

4,050,561

0.975117

3,500,880

84.28

768

736

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