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Table 1 Classification of SNVs detected in the 266 M1 plants

From: Whole-Genome Sequencing of Rice Mutant Library Members Induced by N-Methyl-N-Nitrosourea Mutagenesis of Fertilized Egg Cells

Variant type*

REF

ALT

No. of sites

%

A

C

1060

0.16

A

G

8000

1.22

A

T

11,768

1.79

C

A

7288

1.11

C

G

623

0.09

C

T

301,984

45.99

G

A

297,005

45.23

G

C

708

0.11

G

T

7336

1.12

T

A

11,776

1.79

T

C

8155

1.24

T

G

966

0.15

Total

 

656,669

100.00

Ts/Tv ratio

 

14.81 (615,144/41,525)

 
  1. *REF and ALT represent the reference base and the alternative base, respectively