SNP | Primary trait (p-value, effect) | Secondary trait (p-value, effect) | Previously reported QTLs/genes |
---|---|---|---|
S1_1931325 | CT(9.20E−05, 3.5%), HGW (2.24E−05, 3.42%) |  | gw1 (Yu et al. 1997) |
S1_35199996 | CT (4.86E−05, 6.17%) | PH (0.011, 6.80%) |  |
S2_21858276 | CT (5.95E−06, 4.12%) | PB ( 4.98E−02, 3.19%) | AQFP026/bct2b (Mu et al. 2004) |
S3_15,462,193 | CT (1.70E−06, 6.75%) | PH (0.026303753, 5.56%), PB (0.021535861, 6.26%) |  |
S6_16,241,331 | CT (7.80E−05, 6.44%) |  | AQDZ008 (Kashiwagi and Ishimaru 2004) |
S7_1,592,572 | CT (8.89 E−05, 3.73%) | PB ( 2.20792E−4, 5.48%) |  |
S7_18,874,511 | CT (2.79E−05, 7.83%) |  | AQDZ009 (Kashiwagi and Ishimaru 2004) |
S7_24,536,919 | CT (2.99E−05, 7.27%) | PH (8.47 E−03, 13.23%) |  |
S9_21,545,679 | CT (8.02E−06, 3.98%) |  |  |
S11_21,499,010 | CT (9.40E−05, 3.56%) | PB (1.58 E−04, 5.46%), PH (1.88E−02, 3.18%) | bct11c (Mu et al. 2004) |
S2_30,762,305 | PL (5.91E−05, 2.13%) | PH (0.021162648, 3.20%) | pl2a/AQDQ013 (Zhuang et al. 1997) |
S3_32,359,666 | PL (1.17E−05, 4.39%) |  | qPL-3–2/CQX12 (Yamamoto et al. 2016) |
S4_34,899,389 | PL (5.89E−05, 4.06) |  |  |
S6_6,597,022 | PL (1.37E−07, 4.70%) | PH(4.67879E−04, 7.92%), PB(0.005270489, 7%) | qPL-6/AQGM011, AQDY083, AQDY082, AQCU085 (Suh et al. 2005; Kobayashi et al. 2003; Mei et al. 2003) |
S6_11,174,827 | PL(3.76E−06, 3.4%) | CT( 0.020179035, 3.17%), GW(0.026049429, 1.61%) | AQCU085 (Mei et al. 2003) |
S8_11,774,122 | PL(4.83E−07, 8.34%) | PB(0.035139693, 10.31%) | AQCU085 (Mei et al. 2003) |
S9_4,933,781 | PL(4.62E−05, 2.08%) |  | AQCU149 (Mei et al. 2003) |
S10_14,320,467 | PL(3.59E−07, 3.1%) | PH(0.002110037, 4.37%) |  |
S10_16,385,834 | PL(2.00E−06, 5.40%) | PH(0.030803675, 6.90%), PB(0.00164866, 10.75%) |  |
S11_7,438,223 | PL(3.00E−05, 2.08%) |  |  |
S4_30,721,851 | PB(7.49E−05, 5.56%) |  | qPRB-4a (Teng et al. 2002) |
S7_24,282,724 | PB(5.57E−05, 7.60%) | PH(0.042017316, 3.63%) |  |
S6_24,807,445 | GL(6.01E−05, 1.89%) |  | qGL-6 (Li et al. 2003) |
S8_5,775,398 | GL(9.86E−05, 1.84%) |  |  |
S1_40,142,074 | GW(7.92E−05, 2.67%) |  | qGW-1 (Wan et al. 2005) |
S2_7,048,091 | GW(6.96E−05, 2.25%) |  |  |
S2_22,216,515 | GW(1.62E−05, 2.75%) |  |  |
S3_7,917,671 | GW(5.35E−05, 4.64%) |  |  |
S4_12,374,542 | GW(3.99E−06, 4.88%) |  |  |
S4_34,598,600 | GW(8.93E−05, 3.35%) |  |  |
S5_19,130,617 | GW(7.87E−06, 3.87%) |  |  |
S5_23,720,696 | GW(4.31E−05, 2.90%) |  |  |
S5_28,157,471 | GW(5.68E−06, 2.44%) | PH(0.002417007, 3.94%), HGW(0.002092217, 2.68%) |  |
S8_20,423,775 | GW(9.81E−06, 3.00%) |  |  |
S8_24,621,885 | GW(3.61E−06, 3.92%) | PB(0.022511555, 5.8%), PH(0.020274467, 5.36%) |  |
S10_111,061 | GW(5.03E−06, 4.29%) |  |  |
S10_19,109,511 | GW(1.47E−05, 2.4%) |  |  |
S10_19,238,621 | GW(2.16E−05, 3.91%) |  |  |
S1_38,370,584 | HGW(6.88E−07, 7.38%) |  | gw1.2, qTGW1-2, gw1.1 (Moncada et al. 2001; Hittalmani et al. 2002; Septiningsih et al. 2003) |
S2_2,875,772 | HGW(6.46E−05, 3.49%) | GL(0.035508538, 0.98%), PH(0.001764352, 3.4%) | QKw2b (Li et al. 1997) |
S2_3,873,759 | HGW(1.55E−05, 6.38%) | GL(0.005263071, 2.61%) | QKw2b (Li et al. 1997) |
S4_4,499,266 | HGW(1.34E−10, 9.46%) |  |  |
S4_26,914,103 | HGW(9.69E−07, 6.17%) |  | |
S4_31,316,844 | HGW(5.89E−06, 5.43%) |  | AQEO021 (Redoña and Mackill 1998) |
S4_35,115,087 | HGW(3.76E−05, 6.58%) | CT(0.002310095, 6.00%) |  |
S5_24,316,574 | HGW(7.99E−08, 8.85%) |  | |
S11_19,062,952 | HGW(5.30E−07, 8.05%) |  | gw11.1 (Moncada et al. 2001) |