Table 2 Sampled Oryza sativa loci under positive selection during later domestication only
Trait category | Locusc | 5′ Mutationsa | Coding mutationsb | References |
|---|---|---|---|---|
Yield | SD1 in japonica | 5 | 2(27 aa) | Ashikari et al. (2002) |
GS5 | 7 in indica; 2 in japonica | 4(3 aa) in indica; 3(3 aa) in japonica | Li et al. (2011) | |
Dst in japonica | 5 | 5(7 aa) | Li et al. (2013) | |
SPL16 in japonica | 3 | Wang et al. (2015) | ||
NOG1 in japonica | 26 | Huo et al. (2017) | ||
GL6 in indica | 5 | Wang et al. (2019) | ||
Flowering time | Ehd1 in indica | 6 | Doi et al. (2004) | |
Hd5 | 4 in indica; 2 in japonica | 1(1 aa) in indica | Fujino et al. (2013) | |
Grain shattering | SSH1 in japonica | 8 | 1(3 aa) | Jiang et al. (2019) |
Grain texture | Chalk5 in indica | 4 | 3(1 aa) | Li et al. (2014) |
Starch | bZIP58 (RISBZ1) | 5(4 aa) in indica; 2(2 aa) in japonica | Onodera et al. (2001) | |
Unclassified | B1 | 1 in japonica | 3(3 aa) in japonica; early stop codon in indica | Sakamoto et al. (2001) |
B2 in indica | 2 | 3(5 aa) | Sakamoto et al. (2001) | |
CM3 in indica | > 6 | This study | ||
ADH2 in japonica | 14 | This study | ||
PK1 in japonica | 7 | This study | ||
DAHPS1 in indica | 9 | 4(3 aa) | This study | |
Os11g29400.1 | 7 in indica; 7 in japonica | 1(1 aa) in indica; 26(2 aa) in japonica | This study |