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Table 2 Integrated LTG QTLs after substitution mapping

From: Integrative QTL Identification, Fine Mapping and Candidate Gene Analysis of a Major Locus qLTG3a for Seed Low-Temperature Germinability in Rice

QTL

Donor code

Chr

Interval (cM)

Length (cM)

a*

R2 (%)*

qLTG1

W14

1

123.1–139.8

16.7

− 0.17 ± 0.01

29.0 ± 0.6

qLTG2

W08, W09

2

102.7–132.9

30.2

0.11 ± 0.01

19.5 ± 0.8

qLTG3a

W06

3

22.7–29.3

6.6

0.17 ± 0.01

33.0 ± 3.2

qLTG3b

W17

3

108.6–125.0

16.4

− 0.10 ± 0.01

19.2 ± 5.8

qLTG4

W06

4

67.7–80.6

12.9

− 0.16 ± 0.03

28.5 ± 3.8

qLTG5

W01, W11

5

113.9–116.5

2.6

0.14 ± 0.01

28.4 ± 0.5

qLTG6

W23, W27

6

0.7–17.3

16.6

0.10 ± 0.07

19.5 ± 15.0

qLTG7a

W06

7

18.5–28.5

10.0

− 0.22 ± 0.09

39.4 ± 3.7

qLTG7b

W05

7

55.8–80.4

24.6

− 0.24 ± 0.08

39.9 ± 8.9

qLTG8a

W06

8

36.5–43.0

6.5

0.15 ± 0.02

26.9 ± 4.4

qLTG8b

W06

8

82.6–91.7

9.1

0.16 ± 0.01

31.0 ± 3.7

qLTG9

W27

9

48.0–65.1

17.1

− 0.21 ± 0.01

34.2 ± 6.0

qLTG11a

W06

11

39.8–59.3

19.5

0.15 ± 0.01

31.3 ± 1.3

qLTG11b

W17

11

81.9–97.3

15.4

− 0.19 ± 0.07

34.1 ± 9.7

  1. *a = average additive effect of the QTL from different SSSLs; R2 (%) = average additive effect contribution (%) of the QTL from different SSSLs