Fig. 2
From: Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage
Sequence polymorphism between cold tolerant and sensitive cultivars for OsRab11C1. A LD map for the 19.1 kb region containing OsRab11C1 (indicated by the red arrow). Triangle plot for pairwise values (r2) were plotted against physical genomic distantance between markers in the 19.1 kb region. The pairwise LD values of polymorphic SNPs are plotted on both the x-and y-axes. Each cell represents a comparison of two pairs of marker sites and the cells are color-coded with respect to the presence of significant LD. A colored barcode for the significance threshold levels in both diagonals is shown. B Sequence analysis of the candidate gene OsRab11C1 in rice cultivars with extremely low and high survival rates. Tilted numbers at the top represent the position related to the initiation codon of the 5’-UTR, ‘−’ indicates the upstream region of the 5’-UTR, and blank rectangles indicate gene exon regions. The table shows sequence variation between the two groups of cultivars. A, T, G and C are the nucleotide bases, and ‘–’ indicates deletion