Table 1 RNA methylation related genes in rice. “UP” means this gene is overlapping with up hcpeaks or in up genes when comparing Cd to CKvice versa. “NDE” means this gene is not in differential hcpeaks or DE genes
From: Coordination of m6A mRNA methylation and gene transcriptome in rice response to cadmium stress
RAP_id | MSU_id | gene_name | type | 9311_hcpeaks | 9311_DE_genes | NIP_hcpeaks | .NIP_DE_genes |
|---|---|---|---|---|---|---|---|
Os02g0672600 | LOC_Os02g45110 | MTA | writers | NDE | DOWN | NDE | NDE |
Os01g0267100 | LOC_Os01g16180 | MTB | writers | NDE | DOWN | NDE | NDE |
Os03g0147700 | LOC_Os03g05420 | NA | writers | NDE | NDE | NDE | NDE |
Os10g0447600 | LOC_Os10g31030 | NA | writers | NDE | DOWN | NDE | DOWN |
Os06g0474200 | LOC_Os06g27970 | FIP37 | writers | DOWN | NDE | NDE | NDE |
Os03g0554900 | LOC_Os03g35340 | VIRLIZER | writers | NDE | DOWN | NDE | DOWN |
Os10g0494500 | LOC_Os10g35190 | HAKAI | writers | DOWN | NDE | DOWN | NDE |
Os08g0484400 | LOC_Os08g37780 | TRM4A | writers | NDE | NDE | NDE | NDE |
Os09g0471900 | LOC_Os09g29630 | TRM4B | writers | UP | NDE | UP | NDE |
Os01g0329800 | LOC_Os01g22630 | ECT11 | readers | NDE | NDE | NDE | NDE |
Os08g0224200 | LOC_Os08g12760 | ECT9 | readers | NDE | NDE | NDE | NDE |
Os06g0677700 | LOC_Os06g46400 | CPSF30 | readers | NDE | DOWN | NDE | DOWN |
Os03g0317000 | LOC_Os03g20180 | ECT7 | readers | NDE | UP | NDE | NDE |
Os03g0748000 | LOC_Os03g53670 | ECT4 | readers | NDE | NDE | NDE | NDE |
Os01g0679900 | LOC_Os01g48790 | ECT8 | readers | NDE | UP | NDE | NDE |
Os04g0608800 | LOC_Os04g51940 | ECT1 | readers | NDE | UP | NDE | UP |
Os08g0556000 | LOC_Os08g44200 | ECT5 | readers | NDE | NDE | NDE | NDE |
Os07g0170300 | LOC_Os07g07490 | ECT2 | readers | NDE | DOWN | NDE | DOWN |
Os04g0608900 | LOC_Os04g51950 | ECT6 | readers | NDE | NDE | NDE | NDE |
Os05g0130600 | LOC_Os05g04000 | ECT10 | readers | NDE | UP | NDE | UP |
Os05g0105600 | LOC_Os05g01520 | ECT3 | readers | NDE | UP | NDE | NDE |
Os03g0816500 | LOC_Os03g60190 | ALKBH1A | erasers | NDE | NDE | NDE | NDE |
Os11g0488500 | LOC_Os11g29690 | ALKBH1B | erasers | NDE | NDE | NDE | NDE |
Os06g0286310 | LOC_Os06g17830 | ALKBH2 | erasers | NDE | NDE | NDE | NDE |
Os10g0420000 | LOC_Os10g28410 | ALKBH6 | erasers | UP | NDE | NDE | NDE |
NA | LOC_Os04G51360 | ALKBH8 | erasers | NDE | NDE | NDE | NDE |
Os11g0657200 | LOC_Os11g43610 | NA | erasers | NDE | NDE | NDE | NDE |
Os06g0138200 | LOC_Os06g04660 | ALKBH9A | erasers | UP | NDE | NDE | NDE |
Os05g0401500 | LOC_Os05g33310 | ALKBH10A | erasers | NDE | NDE | NDE | NDE |
Os10g0116900 | LOC_Os10g02760 | ALKBH10B | erasers | DOWN | NDE | DOWN | DOWN |