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Rice
Fig. 10 | Rice

Fig. 10

From: Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability

Fig. 10

Conserved sequence motifs identified in the promoter and the first intron regions of rice GA2ox1, GA2ox3, GA2ox6 and their orthologs in B. distachyon and S. bicolor. The sequences 1000 bp upstream of the start codon and the sequences of the first intron of all rice OsGA2oxs and their orthologs from B. distachyon and S. bicolor were analyzed by phylogenetic footprinting (http://plantpan.itps.ncku.edu.tw/index.html). The identified conserved regions are colored blue for Bd and green for Sb, and their relative sequence locations in each conserved region are shown. The exons are colored orange, and their sequence lengths are shown. The representative binding motifs with red boxes have been characterized, and those with blue boxes have not yet been characterized. a The relative locations of the AT-Hook motif in region 1 and the KNOX motif in region 2 of the first intron in OsGA2ox1 are indicated. b The relative locations of the ABRE motif in region 1 and the B3 motif in region 2 of the OsGA2ox3 promoter region are indicated. c The relative locations of the WRKY and RAmy1A Pyrmidine box motifs in the first intron of OsGA2ox6 are indicated

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