Fig. 8
From: Determinant Factors and Regulatory Systems for Anthocyanin Biosynthesis in Rice Apiculi and Stigmas
Haplotype analysis of OsC1 and OsDFR in a panel of 176 rice accessions. Haplotype analysis of OsC1 (a) and OsDFR (b) in the mini core collection. A.A.Sub, indicates amino acid substitution. CAG, colored apiculi and colored stigmas; CAWG, colored apiculi and straw-white stigma; WAG, straw-white apiculi and straw-white stigma. Deletion and insertion sites are indicated by dashed lines. Haplotype analyses of OsC1 and OsDFR were conducted according to the sequences of Nipponbare (Hap1). Non-functional haplotype is in yellow. Polymorphic nucleotides causing loss-of-function are in purple. The number of accessions of each haplotype is shown in the right column. Sub1, substitution of ACGGCAGCGGCGGCGGCGGCGGCGACGACGA CCACCGTGTGGGCG (Seq1) by GCAGCCAGCCT (Seq2)