Skip to main content

Table 2 Mean shares (%) of the eight categories of haplotypes identified by the KDE-based local classification, in each population and subpopulation of the Asian and Malagasy diversity panels

From: Evolutionary Processes Involved in the Emergence and Expansion of an Atypical O. sativa Group in Madagascar

Diversity panel Global classification KDE-based local classification
ind cAus Jap ind-jap ind-cAus jap-cAus ind-jap-cAus Outlier
Asian Panel indica 68.9 1.2 0.9 4.8 12.3 2.9 8.9 0.1
(59.8–84.8) (0.9–1.9) (0.4–2.7) (2.1–7.4) (5.8–19.2) (1.6–4.5) (3.8–15.7) (0–0.4)
- XI-1 67.6 0.5 1.0 5.2 12.4 3.4 9.8 0.1
(57.6–85.6) (0.2–1.6) (0.3–2.9) (2–7.9) (4.3–17.9) (1.7–9) (4.1–18.9) (0–0.2)
- XI-2 65.6 2.9 0.5 4.4 14.5 2.8 8.5 0.8
(51.4–80) (1.9–4.8) (0.2–1.6) (1.7–6.6) (8.4–23.2) (−0.4–4.7) (1.2–15.1) (0–8.6)
- XI-3 72.7 0.3 0.5 4.6 10.9 2.7 8.3 0.1
(60.8–88.5) (0.1–0.7) (0.1–2.4) (2–9.3) (4.1–19.9) (1.5–4.5) (3.3–13.9) (0–0.3)
- X-adm 67.2 1.5 1.4 5.0 12.6 3.0 9.2 0.1
(57.5–83.5) (1.2–2.3) (0.7–3.3) (2.2–7.2) (6.2–18.9) (1.7–4.6) (4.1–16.1) (0–0.5)
japonica 1.0 0.4 58.4 13.8 3.8 4.0 17.7 0.8
(0.4–1.8) (0.3–0.7) (36.4–71.6) (3–23.2) (2.7–6.5) (2.7–6.5) (9.7–27.3) (0.1–7.2)
- GJ-trop 1.1 0.5 58.2 14.7 3.7 3.9 16.0 2.0
(0.3–2.0) (0.3–1.1) (36.3–71.9) (3.1–23.2) (1.9–6.4) (1.8–6.3) (8.4–27.4) (0.1–9.8)
- GJ-sbtrop 0.8 0.4 58.4 14.5 4.1 4.2 16.5 1.3
(0.1–1.7) (0.1–0.9) (40.9–73.4) (2.9–23.9) (2.8–6.9) (2.8–6.4) (9.1–25.5) (0.1–6.6)
- GJ-temp 1.0 0.2 55.7 14.6 4.5 4.6 18.2 0.8
(0.4–2.4) (0.0–0.6) (33.7–71.4) (3.2–23.0) (2.8–6.9) (2.9–7.1) (11.1–28.1) (0.0–3.9)
- GJ-adm 2.7 0.7 54.8 14.8 4.4 4.4 17.1 1.5
(1.4–5.0) (0.3–1.1) (35.3–70.3) (5.1–22.7) (3.0–6.5) (2.8–6.6) (9.8–27.9) (0.0–6.6)
cAus 1.8 53.1 0.8 3.3 26.4 3.5 10.8 0.2
(1.3–2.3) (37.6–63.8) (0.5–2) (1.7–6.7) (14.4–42.2) (1.8–6.7) (4.8–18.4) (0–0.4)
cBas 16.9 13.2 31.2 6.9 7.1 2.6 11.1 11.0
(10.6–27.4) (4.9–22.4) (20.7–38.7) (2.2–12.9) (2.9–10.9) (−0.9–5.4) (4.4–21.2) (6.1–23.7)
Admix 24.4 12.4 24.3 7.4 10.6 4.3 10.3 6.2
(20.1–27.2) (8.7–16.4) (16.4–30.9) (2.3–11.3) (7.5–14.5) (2–13.3) (1.8–17.2) (4.9–9.7)
Malagasy panel G1 69.7 1.3 0.6 5.0 11.9 2.8 8.4 0.4
(59.9–84.2) (0.6–2.3) (0.1–2.1) (2.0–7.6) (4.5–17) (1.6–4.2) (3–16.2) (0.1–1.2)
G6 2.7 2.0 57.4 12.5 3.9 3.8 15.0 3.1
(1.5–4.8) (0.8–4.1) (38.3–69.0) (3.0–18.9) (2–7) (1.6–6.8) (7.1–23.1) (1.2–10.8)
Gm 50.6 8.2 5.4 5.7 14.3 3.3 9.8 2.6
(34.9–79.6) (2.4–19.8) (1.2–24) (2.1–13.2) (6–21.5) (1.8–6.3) (3.7–19.2) (1.3–3.8)
Admix 58.9 6.2 3.4 4.6 12.5 2.8 7.4 4.1
(49.2–75.0) (2.4–8.3) (2.6–5.1) (1.9–8.8) (5.0–20.5) (1.0–5.2) (1.6–12.9) (2.3–6.2)