Table 2 Putative QTL associated with RCA identified using Sherpa/IRAT109 RIL population

GH

qRCA1.1

1

Chr1_39524707

39.52

154.60

148.7–162.4

5.37

2.10

Sherpa

6.99

qRCA3

3

Chr3_16551946

16.55

78.23

71.6–81.0

6.10

−1.90

IRAT109

8.00

qRCA4

4

Chr4_30036160

30.03

101.43

97.0–104.0

12.45

−2.97

IRAT109

17.40

(36.73)

IWS19

qRCA1.2

1

Chr1_19340596

19.34

84.87

67.2–89.8

5.06

−1.73

IRAT109

5.22

qRCA1.3

1

Chr1_24919134

24.92

99.88

99.0–100.5

7.94

1.81

Sherpa

8.42

qRCA1.1

1

Chr1_39416289

39.42

161.41

150.7–164.9

7.66

1.39

Sherpa

8.10

qRCA2.1

2

Chr2_27972049

27.97

122.53

119.0–133.2

4.64

1.36

Sherpa

4.76

qRCA2.2

2

Chr2_30400561

30.40

134.12

131.4–135.9

9.48

−1.92

IRAT109

10.22

qRCA4

4

Chr4_29775386

29.78

98.97

97.0–99.9

20.13

−2.47

IRAT109

24.18

qRCA11

11

Chr11_19591983

19.59

76.31

73.4–83.3

5.74

−1.16

IRAT109

5.96

(49.72)

WW20

qRCA1.1

1

Chr1_39524707

39.52

153.61

148.7–162.4

9.35

3.68

Sherpa

10.22

qRCA3

3

Chr3_16551946

16.55

76.34

44.6–100.3

3.31

−1.86

IRAT109

4.12

qRCA4

4

Chr4_30366129

30.37

102.14

99.0–104.6

15.51

−4.29

IRAT109

21.11

(38.31)

IWS20

qRCA1.2

1

Chr1_23120475

23.12

85.86

78.0–90.8

5.40

−2.44

IRAT109

5.42

qRCA1.3

1

Chr1_24919134

24.92

99.88

99.0–100.5

8.84

2.63

Sherpa

9.18

qRCA1.1

1

Chr1_39416289

39.42

161.41

152.6–164.9

8.90

1.97

Sherpa

9.25

qRCA2.1

2

Chr2_27972049

27.97

122.53

119.0–133.2

4.30

1.71

Sherpa

4.27

qRCA2.2

2

Chr2_30400561

30.40

134.12

131.4–135.9

8.79

−2.42

IRAT109

9.12

qRCA4

4

Chr4_29775386

29.78

98.97

97.0–99.9

20.70

−3.28

IRAT109

24.28

qRCA11

11

Chr11_20763446

20.76

82.62

73.4–84.0

5.02

−1.38

IRAT109

5.03

(51.22)