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Table 3 Changes in expression of selected miRNA targets in RIL TR3RR upon infestation with BPH or WBPH

From: RNA-Sequencing Reveals Differentially Expressed Rice Genes Functionally Associated with Defense against BPH and WBPH in RILs Derived from a Cross between RP2068 and TN1

miRNA ID

Target gene transcript ID

Fold change value for

MSU Loc ID

Description

BPH

WBPH

miR399k

BGIOSGA031778

2.5

NC

?

 

BGIOSGA010321

2.1

NC

LOC_Os03g39740

Regulation of DNA replication

miR399g

BGIOSGA002845

2.2

NC

LOC_Os01g07100

Transport, proteasome assembly

miR393a

BGIOSGA030203

2.1

NC

?

 

BGIOSGA016952

2.3

NC

?

 

miR7692-5p

BGIOSGA006222

−2.2

NC

LOC_Os02g35900

thioredoxin, putative,

miR2869

BGIOSGA023232

NC

2.1

?

 

miR5791

BGIOSGA030810

NC

2.0

LOC_Os09g26190

CBS domain containing protein

BGIOSGA004148

NC

2.3

LOC_Os01g47190

phosphoglycerate mutase, putative

miR413

BGIOSGA024095

NC

2.1

LOC_Os07g37250

thylakoid formation1, chloroplast precursor

miR6245

BGIOSGA011796

NC

−2.1

? – Patatin

 

miR413

BGIOSGA27084

NC

−2.2

?

 
  1. ? Not listed in MSU Loc ID
  2. NC No change in expression level