RNA-Sequencing Reveals Differentially Expressed Rice Genes Functionally Associated with Defense against BPH and WBPH in RILs Derived from a Cross between RP2068 and TN1

Divya, Dhanasekar; Sahu, Nihar; Reddy, P. Sairam; Nair, Suresh; Bentur, J. S.

doi:10.1186/s12284-021-00470-3

Rice

Table 2 List of differentially expressed key genes selected^a for validation using qRT-PCR

From: RNA-Sequencing Reveals Differentially Expressed Rice Genes Functionally Associated with Defense against BPH and WBPH in RILs Derived from a Cross between RP2068 and TN1

S. No	Transcript ID	Locus ID	Gene name/function	Change in expression (X fold)
S. No	Transcript ID	Locus ID	Gene name/function	BPH	WBPH
	UPUP
1	BGIOSGA011927	LOC_Os03g06850	B3 DNA binding domain	3.26	3.97
2	BGIOSGA005805	LOC_Os02g46640	HSP DnaJ protein	2.39	2.83
3	BGIOSGA014560	LOC_Os04g47190	Aminotransferase domain	2.26	2.87
4	BGIOSGA012548	LOC_Os03g21110	emp24/gp25L/p24	2.02	2.88
5	BGIOSGA011316	LOC_Os03g08800	CutA, chloroplast precursor	2.58	3.50
6	BGIOSGA023418	LOC_Os06g45090	Expressed protein	2.91	4.17
7	BGIOSGA018591	LOC_Os05g12170	Plant-specific domain TIGR01589	2.41	2.20
8	BGIOSGA030199	LOC_Os09g04160	Expressed protein	2.26	2.70
	DNDN
9	BGIOSGA025818	LOC_Os07g33440.1	Cytochrome P450, putative,	−6.77	−6.31
10	BGIOSGA002685	LOC_Os01g03530	Multicopper oxidase domain	−5.59	−3.32
11	BGIOSGA025088	LOC_Os07g03710.1	SCP-like extracellular protein	−5.46	−5.40
12	BGIOSGA000957	LOC_Os01g50420.1 F	STE_MEKK_ste11_MAP3K.7 - STE kinases	−4.82	−3.13
13	BGIOSGA005235	LOC_Os01g73250	Abscisic acid stress and ripening	−4.05	−6.88
14	BGIOSGA001631	LOC_Os01g27210	Glutathione s transferase	−3.96	−2.76
15	BGIOSGA005232	LOC_Os01g73200	Peroxidase precursor	−3.61	−4.53
16	BGIOSGA029543	LOC_Os09g31430.1	Os9bglu30 - beta-glucosidase	−2.76	−8.60
	UPDN
17	BGIOSGA013307	LOC_Os03g47140	Growth regulatory factor	2.24	−3.67
18	BGIOSGA013363	LOC_Os03g48490	Centromere protein	2.47	−4.67
19	BGIOSGA036408	LOC_Os12g13570.1	MYB family transcription factor	2.64	−2.92
	DNUP
20	BGIOSGA004899	LOC_Os01g65210	Proton-dependent oligopeptide transport, putative	−3.38	2.38
21	BGIOSGA021302	LOC_Os06g23274	Zinc finger, C3HC4, domain	−3.89	2.39
22	BGIOSGA040594	LOC_Os10g01044	Isoflavone reductase, putative	−2.66	2.79
23	BGIOSGA014339	LOC_Os04g52700	Expressed protein	−3.51	3.34
24	BGIOSGA040670	LOC_Os05g18470	CRAL/TRIO domain	−2.41	2.36
25	BGIOSGA002552	LOC_Os01g01650.1	Isoflavone reductase like, putative	−2.10	3.16
26	BGIOSGA016833	LOC_Os04g45370.1	OsSAUR19 Auxin-responsive SAUR	−3.93	4.35
27	BGIOSGA034582	LOC_Os11g03440.1	MYB-like DNA-binding domain	−2.06	5.27

^aSelection based on RNAseq data obtained for TR3RR when challenged with either BPH or WBPH

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