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Table 2 List of differentially expressed key genes selecteda for validation using qRT-PCR

From: RNA-Sequencing Reveals Differentially Expressed Rice Genes Functionally Associated with Defense against BPH and WBPH in RILs Derived from a Cross between RP2068 and TN1

S. No Transcript ID Locus ID Gene name/function Change in expression
(X fold)
BPH WBPH
  UPUP   
1 BGIOSGA011927 LOC_Os03g06850 B3 DNA binding domain 3.26 3.97
2 BGIOSGA005805 LOC_Os02g46640 HSP DnaJ protein 2.39 2.83
3 BGIOSGA014560 LOC_Os04g47190 Aminotransferase domain 2.26 2.87
4 BGIOSGA012548 LOC_Os03g21110 emp24/gp25L/p24 2.02 2.88
5 BGIOSGA011316 LOC_Os03g08800 CutA, chloroplast precursor 2.58 3.50
6 BGIOSGA023418 LOC_Os06g45090 Expressed protein 2.91 4.17
7 BGIOSGA018591 LOC_Os05g12170 Plant-specific domain TIGR01589 2.41 2.20
8 BGIOSGA030199 LOC_Os09g04160 Expressed protein 2.26 2.70
  DNDN   
9 BGIOSGA025818 LOC_Os07g33440.1 Cytochrome P450, putative, −6.77 −6.31
10 BGIOSGA002685 LOC_Os01g03530 Multicopper oxidase domain −5.59 −3.32
11 BGIOSGA025088 LOC_Os07g03710.1 SCP-like extracellular protein −5.46 −5.40
12 BGIOSGA000957 LOC_Os01g50420.1 F STE_MEKK_ste11_MAP3K.7 - STE kinases −4.82 −3.13
13 BGIOSGA005235 LOC_Os01g73250 Abscisic acid stress and ripening −4.05 −6.88
14 BGIOSGA001631 LOC_Os01g27210 Glutathione s transferase −3.96 −2.76
15 BGIOSGA005232 LOC_Os01g73200 Peroxidase precursor −3.61 −4.53
16 BGIOSGA029543 LOC_Os09g31430.1 Os9bglu30 - beta-glucosidase −2.76 −8.60
  UPDN     
17 BGIOSGA013307 LOC_Os03g47140 Growth regulatory factor 2.24 −3.67
18 BGIOSGA013363 LOC_Os03g48490 Centromere protein 2.47 −4.67
19 BGIOSGA036408 LOC_Os12g13570.1 MYB family transcription factor 2.64 −2.92
  DNUP     
20 BGIOSGA004899 LOC_Os01g65210 Proton-dependent oligopeptide transport, putative −3.38 2.38
21 BGIOSGA021302 LOC_Os06g23274 Zinc finger, C3HC4, domain −3.89 2.39
22 BGIOSGA040594 LOC_Os10g01044 Isoflavone reductase, putative −2.66 2.79
23 BGIOSGA014339 LOC_Os04g52700 Expressed protein −3.51 3.34
24 BGIOSGA040670 LOC_Os05g18470 CRAL/TRIO domain −2.41 2.36
25 BGIOSGA002552 LOC_Os01g01650.1 Isoflavone reductase like, putative −2.10 3.16
26 BGIOSGA016833 LOC_Os04g45370.1 OsSAUR19 Auxin-responsive SAUR −3.93 4.35
27 BGIOSGA034582 LOC_Os11g03440.1 MYB-like DNA-binding domain −2.06 5.27
  1. aSelection based on RNAseq data obtained for TR3RR when challenged with either BPH or WBPH