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Table 1 Significant loci for rice bacterial blight resistance obtained from genome-wide association study

From: Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project

QTL namea LD block interval (bp) Number of significant SNP Lead SNP position (bp) Lead SNP P-value Overlapped with known genes/QTL
qC4–11 27,382,744–27,579,384 4 27,490,677 3.70E-08 L11(Zhang et al. 2017a), QBbr11–1(Chen et al. 2016)
qC5–4 31,060,503–31,170,315 2 31,071,832 1.60E-08 novel
qC5–5 283,658–476,382 51 348,262 2.81E-10 xa5(Iyer-Pascuzzi et al. 2008)
qC5–11.1 27,985,691–28,013,096 8 27,996,768 1.58E-09 xa44(t) (Kim 2018), L11(Zhang et al. 2017a), QBbr11–2(Chen et al. 2016)
qC5–11.2 28,430,697–28,479,727 7 28,479,727 9.75E-10 L11(Zhang et al. 2017a), QBbr11–2(Chen et al. 2016)
qC5–12 3,460,540–3,549,818 12 3,493,693 2.40E-10 novel
qV-5.1 288,855–443,952 272 436,664 1.14E-14 xa5(Iyer-Pascuzzi et al. 2008)
qV-5.2 444,857–476,382 98 464,676 3.55E-10 novel
qP9a-12.1 17,003,758–17,085,897 65 17,016,036 1.58E-13 L12(Zhang et al. 2017a)
qP9a-12.2 17,169,665–17,339,744 498 17,274,286 2.03E-16 L12(Zhang et al. 2017a), xa25(Liu et al. 2011)
qP9a-12.3 17,342,010–17,426,793 610 17,402,252 1.03E-14 L12(Zhang et al. 2017a)
  1. aqX-N indicates QTL located on chromosome N conferring resistance to X