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Fig. 4 | Rice

Fig. 4

From: Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project

Fig. 4

Analysis of associated region of qC5–11.1 and its candidate gene LOC_Os11g46250. a Manhattan plot (top) and linkage disequilibrium heatmap (bottom) of genomic region surrounding qC5–11.1. The red arrow indicates the position of significant SNPs located in LOC_Os11g46250. b Exon-intron structure and haplotypes of LOC_Os11g46250 derived from significant SNPs. Rectangles and lines represent exons and introns, respectively and the coding sequence highlighted in blue. c Lesion length (LL) of accessions with different haplotypes of LOC_Os11g46250 inoculated with strain C5. d LL of transgenic lines and wild-type inoculated with C5. Box edges represent the 0.25 and 0.75 quantiles with median values indicated by bold lines. ** and *** refer to significant differences at P < 0.01 and 0.001, respectively. WT and CP-1/CP-2/CP-3 refer to wild-type Nipponbare and three independent transgenic lines carrying complementary genomic fragments, respectively

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