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Table 4 QTLs identified in this study

From: Two Novel QTLs for the Harvest Index that Contribute to High-Yield Production in Rice (Oryza sativa L.)

Trait

Chr. a

2016ISG_F

2017ISG_F

2018ISG_F

2017TKB

  

LOD

Peak

position (cM)

QTL

range

(cM)

Additive

effectb

PVE (%) c

LOD

Peak

position (cM)

QTL

range

(cM)

Additive

effectb

PVE

(%) c

LOD

Peak

position

(cM)

QTL

range

(cM)

Additive

effectb

PVE

(%) c

LOD

Peak

position

(cM)

QTL

range

(cM)

Additive

effectb

PVE

(%) c

Harvest index (HI)

5

2.42

36.9

36.2–37.5

0.009

6.9

5.48

32.8

22.0–41.4

0.013

15.0

6.62

34.4

20.2–44.1

0.015

17.9

4.67

50.7

13.7–57.1

0.015

13.0

 

8

4.87

20.9

10.4–21.3

0.013

13.5

4.55

13.8

7.6–21.3

0.012

12.7

3.57

13.8

8.5–21.23

0.011

10.1

     

Panicle weight (PW)

5

     

3.19

23.90

15.6–32.4

0.515

9.0

2.82

25.2

19.4–31.5

0.775

8.0

     

Culm and leaf weight (CW)

5

               

3.10

130.7

125.6–130.7

−1.461

8.8

 

8

          

3.10

20.4

11.0–21.3

−0.626

8.8

     

Total number of spikelets per panicle (TS)

12

          

2.50

2.50

0–0.4

−3.000

7.2

     

Fertility rate (FR)

5

          

2.80

2.80

66.2–74.3

1.214

8.0

     
 

8

          

3.17

20.89

20.0–21.3

1.239

9.0

     

Grain weight (GWt)

5

          

14.78

34.7

8.1–50.8

1.248

35.5

     

Grain length (GL)

5

          

9.04

32.7

20.2–42.0

−0.130

23.6

     
 

8

          

2.44

19.0

18.9–19.1

− 0.085

7.0

     
 

9

          

2.74

50.4

47.7–53.1

−0.068

7.8

     

Grain width (GWd)

5

          

36.7

34.1

0–75.9

0.147

66.3

     
 

9

          

3.8

117.7

105.6–118.2

0.062

10.7

     
  1. a “Chr.” indicates “chromosome”
  2. b A positive value for the additive effect indicates that the YTH183 allele increases the trait
  3. c “PVE” indicates a percent of the variation explained