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Fig. 2 | Rice

Fig. 2

From: Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development

Fig. 2

DNA methylation of lncRNA loci and P-circRNAs in MH63. a CG, CHG and CHH methylation densities in the parental genes of circRNAs (orange), lncRNAs locus (grey) and PC genes (cornflower blue) and their 1 kb up/down flanking regions. b Distribution of the positions of circRNAs (black) and DNA methylation (orange for CG, green for CHG and blue for CHH) in the P-circRNAs normalized into 1 kb length. DNA methylation levels of all PC genes were used as controls (light color represents PC genes). DNA methylation densities in the 2 kb up/down flanking regions of the TSS and TES of (c) lncRNAs and (d) circRNAs were categorized to low (first quantile, orange line) and high expression (three quantile, cornflower blue line). e Histogram showed the number of lncRNA loci containing hyper- and hypo-methylation on DMRs in body. LncRNAs were classified into groups as the same as a. DNA methylation (CG, CHG and CHH) profile of non-differently expressed (None, grey), upregulated (Up, orange), and downregulated (Down, cornflower blue) lncRNA loci in MH63. P. vs. S. referred to the comparison between panicle and seedling. P. vs. R. referred to the comparison between panicle and root. R. vs S. referred to the comparison between root and seedling

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