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Table 5 QTLs for heading date and plant height based on the integrated map in 8PL

From: Construction and integration of genetic linkage maps from three multi-parent advanced generation inter-cross populations in rice

QTL Chr. Pos. (CI) a (cM) Left marker Right marker LOD PVE (%) b Genotypic effect
a1 a2 a3 a4 a5 a6 a7 a8
IqHD1 1 263.71 (263.06–265.16) Chr1–6,588,793 Chr1–5,958,935 9.97 3.54 2.61 2.47 1.19 −1.34 −1.37 −0.62 −1.37 −1.56
IqHD2 2 84.90 (83.15–85.75) Chr2–3,433,320 Chr2–5,042,884 12.92 5.03 1.26 −2.19 0.73 −1.27 2.68 −1.33 2.18 −2.05
IqHD6.1 6 8.10 (7.75–8.45) Chr6–5,681,741 Chr6–26,069,125 12.68 4.67 −1.44 −1.81 1.12 1.77 −1.64 −1.43 2.52 0.91
IqHD6.2 6 92.50 (92.15–92.75) Chr6–3,305,201 Chr6–2,927,171 46.04 21.05 −0.81 −1.67 −1.21 −0.84 −2.64 −2.65 9.03 0.79
IqHD8 8 42.40 (42.35–42.55) Chr8–6,181,174 Chr8–9,288,403 9.11 3.23 2.05 −0.41 1.53 −3.72 −0.82 − 0.11 −0.45 1.94
IqPH1 1 358.21 (358.06–358.26) Chr1–38,503,485 Chr1–38,103,681 19.49 9.47 −2.49 − 2.86 7.78 −5.47 −4.61 7.18 3.34 −2.88
IqPH2 2 304.21 (304.16–304.76) Chr2–418,968 Chr2–2,416,287 11.11 5.19 −4.67 1.96 3.66 −1.56 −2.36 4.85 0.86 −2.74
IqPH11 11 46.10 (44.65–46.95) Chr11–19,718,068 Chr11–23,080,452 10.36 4.73 −3.06 −2.47 − 3.85 −4.11 2.79 3.99 2.57 4.15
  1. aPosition in cM and 1-LOD confidence interval (CI)
  2. bPercentage of phenotypic variance explained