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Table 3 QTLs for heading date and plant height in the eight-way-cross RIL population

From: Construction and integration of genetic linkage maps from three multi-parent advanced generation inter-cross populations in rice

QTL Chr. Pos. (CI)a (cM) Left marker Right marker LOD PVE (%)b Genotypic effect Cloned gene
a1 a2 a3 a4 a5 a6 a7 a8
qHD6.1 6 11.10 (10.95–11.15) Chr6–1,826,585 Chr6–2,336,493 9.42 5.15 −1.50 −5.38 − 5.72 −3.26 − 0.46 − 2.44 − 0.53 19.30  
qHD6.2 6 70.50 (70.15–70.85) Chr6–3,305,201 Chr6–2,927,171 42.38 15.66 −2.54 −3.04 −0.44 1.52 −4.02 −1.30 9.43 0.39 Hd3a
qHD8 8 73.40 (73.25–73.55) Chr8–4,701,356 Chr8–4,892,161 10.64 3.48 −1.00 2.36 3.50 −1.44 −1.46 −2.56 2.06 −1.45 Ghd8
qPH1.1 1 7.10 (7.05–7.15) Chr1–38,264,136 Chr1–38,383,144 44.81 6.92 −4.12 −7.18 12.18 −3.40 −4.67 17.53 −5.99 −4.34 sd1
qPH1.2 1 11.80 (11.75–11.85) Chr1–37,101,140 Chr1–37,595,895 36.93 5.92 −4.84 −4.20 11.54 −5.12 −5.06 16.52 −2.79 −6.04 Psd1
qPH2 2 129.50 (129.45–129.55) Chr2–35,144,957 Chr2–26,805,011 15.37 2.13 1.99 3.60 −3.57 −3.60 −3.79 −1.51 1.96 4.92  
qPH8 8 21.00 (20.95–21.15) Chr8–5,727,201 Chr8–6,128,189 8.74 1.42 −2.86 3.60 4.07 −2.94 −1.34 −0.77 2.04 −1.79  
qPH11 11 57.00 (56.85–57.05) Chr11–22,884,317 Chr11–21,254,126 9.32 1.28 4.20 −1.84 0.44 −4.13 2.61 −3.45 2.67 −0.50  
qPH12 12 48.40 (48.25–48.55) Chr12–21,784,888 Chr12–21,468,631 14.61 2.01 1.47 0.88 −1.30 −1.88 3.48 −3.05 4.82 −4.44  
  1. aPosition in cM and 1-LOD confidence interval (CI)
  2. bPercentage of phenotypic variance explained