Rice

Table 2 Genome-wide significant associations for BSS and NSS of the F₁ population with the background of CMS-HL in year 2013 and 2014 using the linear mixed model

From: Genome-Wide Association Studies Reveal the Genetic Basis of Fertility Restoration of CMS-WA and CMS-HL in xian/indica and aus Accessions of Rice (Oryza sativa L.)

Trait	Chr.	2013					2014					Known loci
Trait	Chr.	Position	P-LMM	Allele¹⁾	MAF²⁾	PVE (%)³⁾	Position	P-LMM	Allele	MAF	PVE (%)	Known loci
BSS	2						26,741,479	2.24E-07	G/A	0.059	8.18
	4						12,956,620	1.17E-08	T/C	0.359	8.81
	6						21,359,687	1.36E-07	A/T	0.377	11.25
	10	18,828,056	1.39E-08	G/A	0.492	12.79	18,880,986	1.74E-10	A/G	0.456	18.09	Rf5
	12						16,744,603	7.69E-08	A/G	0.101	6.35
NSS	10	18,804,231	4.08E-15	A/C	0.231	28.25	18,876,148	8.10E-20	A/G	0.129	31.08	Rf5

Note: 1) Allele is presented with the format of ‘major allele / minor allele’
2) MAF minor allele frequency
3) PVE phenotypic variation explained by each locus

Back to article page