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Table 1 Summary of SNP and different alleles of the Pi9 gene in different species

From: Identification of Novel Alleles of the Rice Blast-Resistance Gene Pi9 through Sequence-Based Allele Mining

Pi9 allele

Varieties

Number of accessions carrying the allele

Identity to Pi9

Number of SNP sites

Number of SNP sites

Number of inserts/deletions

Number of inserts/deletions

Pt

Ex

In

Pt

Ex

In

Pi9

75–1-127

2

–

–

–

–

–

–

–

–

–

Pi9-Type1

Heo Trang

1

99%

79

29

47

3

17

9

0

8

Pi9-Type2

IR64

2

95%

443

246

94

103

259

10

0

249

Pi9-Type3

HC1H

13

98%

134

33

61

40

26

20

3

3

Pi9-Type4 a

PIIB

11

96%

410

253

56

101

266

10

0

256

Pi9-Type5 a

XS209

56

95%

451

259

57

135

320

9

0

311

Pi9-Type6

YD4038

1

99%

104

25

31

48

241

9

3

12

Pi9-Type7

KAUKKYI ANI

2

99%

105

30

36

39

23

20

0

3

Pi9-Type8 a

DY1H

6

92%

710

519

56

135

581

9

0

572

Pi9-Type9

THAVALU

1

93%

608

312

103

193

342

109

3

230

Pi9-Type10

ZWH210

6

97%

316

282

16

18

269

259

0

10

Pi9-Type11

R03138

3

96%

387

339

22

26

339

234

0

105

Pi9-Type12

JP-5

1

99%

32

22

4

6

9

7

0

2

Pi9-Type13

ZD5H

2

99%

105

26

30

49

26

9

3

14

  1. aPigm is contained in the donor of Pi9-Type4; Piz-t is contained in the donor of Pi9-Type8 and a part of Pi9-Type5; Pi2 is contained in the donor of a part of Pi9-Type5
  2. Pt Promoter; Ex Exon; In Intron. Varieties, Representative donor variety containing the allele