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Table 6 Locations and characteristics of QTLs detected for shoot fresh weight (SFW) under normal and salinity conditions

From: Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

QTL

Chromosome

No. of Associated SNPs

Position/interval (Mbp)

-Log10(p)

r2

qSFWn2.1

2

1

2.13

4.2

10.17

qSFWn2.2

2

1

25.25

4.3

10.53

qSFWn9.1

9

1

20.94

4.7

12.25

qSFWn11.1

11

1

13.86

4.3

11.30

qSFWn11.2

11

1

17.02

4.09

11.10

qSFWs1.1

1

2

32.48–32.54

5.4–6.4

13.38–16.93

qSFWs1.2

1

2

42.43–42.44

4.6–4.8

11.51–12.34

qSFWs11.1

11

1

25.85

5.4

13.16

qSFWs12.1

12

1

21.08

4.1

9.90