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Table 5 Locations and characteristics of QTLs detected for roots fresh weight (RFW) under normal and salinity conditions

From: Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

QTL

Chromosome

No. of Associated SNPs

Position/interval (Mbp)

-Log10(p)

r2

qRFWn1.1

1

5

42.44–42.98

4.1–4.7

6.71–7.77

qRFWn4.1

4

1

2.52

4.14

7.04

qRFWn4.2

4

1

25.86

4.1

6.62

qRFWn6.1

6

1

3.59

4.2

7.18

qRFWn8.1

8

4

16.97–180.89

4.2–5.9

7.18–11.63

qRFWn12.1

12

1

22.14

4.0

6.92

qRFWn12.2

12

1

24.84

4.1

6.71

qRFWs1.1

1

1

11.26

4.9

10.11

qRFWs1.2

1

2

24.91–24.95

4.1

8.10–8.11

qRFWs1.3

1

1

32.33

4.5

6.39

qRFWs1.4

1

34

40.79–42.98

4.3–6.3

6.60–13.16

qRFWs2.1

2

1

35.26

4.2

5.93

qRFWs5.1

5

2

28.54

4.1

5.58

qRFWs6.1

6

3

4.58–4.61

4.1–4.8

5.67–6.90

qRFWs6.2

6

1

20.04

5.2

11.48

qRFWs6.3

6

10

29.76–31.21

4.1–4.7

5.77–6.76

qRFWs8.1

8

9

26.72–26.94

4.0–5.8

5.63–9.25

qRFWs9.1

9

1

17.96

4.5

9.10

qRFWs10.1

10

1

7.32

5.8

9.15

qRFWs11.1

11

8

21.68–21.98

4.1–6.0

6.06–14.61

qRFWs12.1

12

8

18.46–18.60

4.2–5.5

9.96–14.62