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Table 5 Locations and characteristics of QTLs detected for roots fresh weight (RFW) under normal and salinity conditions

From: Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

QTL Chromosome No. of Associated SNPs Position/interval (Mbp) -Log10(p) r2
qRFWn1.1 1 5 42.44–42.98 4.1–4.7 6.71–7.77
qRFWn4.1 4 1 2.52 4.14 7.04
qRFWn4.2 4 1 25.86 4.1 6.62
qRFWn6.1 6 1 3.59 4.2 7.18
qRFWn8.1 8 4 16.97–180.89 4.2–5.9 7.18–11.63
qRFWn12.1 12 1 22.14 4.0 6.92
qRFWn12.2 12 1 24.84 4.1 6.71
qRFWs1.1 1 1 11.26 4.9 10.11
qRFWs1.2 1 2 24.91–24.95 4.1 8.10–8.11
qRFWs1.3 1 1 32.33 4.5 6.39
qRFWs1.4 1 34 40.79–42.98 4.3–6.3 6.60–13.16
qRFWs2.1 2 1 35.26 4.2 5.93
qRFWs5.1 5 2 28.54 4.1 5.58
qRFWs6.1 6 3 4.58–4.61 4.1–4.8 5.67–6.90
qRFWs6.2 6 1 20.04 5.2 11.48
qRFWs6.3 6 10 29.76–31.21 4.1–4.7 5.77–6.76
qRFWs8.1 8 9 26.72–26.94 4.0–5.8 5.63–9.25
qRFWs9.1 9 1 17.96 4.5 9.10
qRFWs10.1 10 1 7.32 5.8 9.15
qRFWs11.1 11 8 21.68–21.98 4.1–6.0 6.06–14.61
qRFWs12.1 12 8 18.46–18.60 4.2–5.5 9.96–14.62