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Table 2 Locations and characteristics of QTLs detected for shoot length (SL) under normal and salinity conditions

From: Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

QTL

Chromosome

No. of Associated SNPs

Position/interval (Mbp)

-Log10(p)

r2

qSLn1.1

1

2

3.40–4.01

4.1–4.30

10.16–10.30

qSLn1.2

1

2

31.80–32.48

4.1

10.15–10.74

qSLn2.1

2

1

6.62

4.2

12.23

qSLn6.1

6

1

8.19

4.2

10.19

qSLn12.1

12

59

11.06–14.22

4.0–4.9

9.64–14.12

qSLs1.1

1

1

32.48

4.00

10.14

qSLs12.1

12

1

21.08

4.00

9.26