Chromosome | Related traits | Position of associated SNP (bp) | Gene RAP ID | Gene function | Tissue with highest transcription |
---|---|---|---|---|---|
1 | RWC | 7,086,172 | Os01g0228300 | Mpv17/PMP22 family protein | Leaf |
RFW | 11,259,217 | Os01g0304100 | Cation chloride cotransporter | Seed | |
RFW | 24,946,338 | Os01g0624700 | WRKY transcription factor 12 | – | |
RDW | 32,358,779 | Os01g0767700 | DEIH-box RNA/DNA helicase | Panicle | |
TW | 34,510,717 | Os01g0812000 | Transcriptional activator of gibberellin-dependent alpha-amylase expression (GAMyb) | Seed | |
RFW | 40,794,206 | Os01g0929500 | Carbonyl reductase-like protein | Panicle | |
RFW | 41,101,759 | Os01g0936200 | Lipase class 3 family protein | Stem | |
RDW | 41,534,764 | Os01g0944700 | Beta-1-glucanase precursor | Stem | |
RDW, RFW | 42,254,208 | Os01g0958500 | RNA binding protein-like | Leaf | |
RDW, RFW | 42,267,480 | Os01g0958800 | Protein of unknown function DUF2305 domain containing protein | Flower | |
RDW, RFW | 42,339,521 | Os01g0960400 | Protein kinase core domain containing protein | Stem | |
RDW, RFW | 42,351,049 | Os01g0960500 | Zinc finger RING/FYVE/PHD-type domain containing protein | Seed | |
RDW, RFW | 42,442,204 | Os01g0963000 | Peroxidase BP 1 precursor | Leaf | |
RDW, RFW | 42,575,260 | Os01g0965600 | Growth inhibition and differentiation-related protein 88 | Root | |
RDW, RFW | 42,591,390 | Os01g0966000 | Plasma membrane H+-ATPase (EC 3.6.1.3) | Stem/leaf | |
RDW, RFW | 42,622,164 | Os01g0966500 | Vacuolar protein sorting protein 55 | Vegetative meristem | |
RDW, RFW | 42,627,050 | Os01g0966700 | Beta-fructofuranosidase (EC 3.2.1.26) | Leaf | |
RDW, RFW | 42,649,896 | Os01g0967100 | Ascorbate peroxidase 2 | Seed | |
RDW, RFW | 42,723,932 | Os01g0968700 | tRNA isopentenyltransferase family protein | Vegetative meristem | |
RDW, RFW | 42,976,353 | Os01g0973300 | Armadillo-like helical domain containing protein, Adaptin | Flower | |
2 | SL-R, RDW-R | 30,423,080 | Os02g0730300 | High-affinity Potassium(K+) Transporter 25, OsHAK25 | Stem |
5 | RFW | 28,534,662 | Os05g0572900 | Pentatricopeptide repeat domain containing protein | Flower |
6 | RFW | 4,612,802 | Os06g0191200 | Zinc ion binding | Flower |
RFW | 20,037,449 | Os06g0535300 | DnaJ domain protein C55 | Leaf | |
RFW, RL | 29,757,694 | Os06g0704600 | Delta-aminolevulinic acid dehydratase | Leaf | |
RFW | 30,484,421 | Os06g0717400 | Pseudouridine synthase domain containing protein | Stem | |
RFW | 31,018,842 | Os06g0728600 | EPS15 homology (EH) domain containing protein | Vegetative meristem | |
RFW | 31,144,213 | Os06g0730600 | Peptidase S9A prolyl oligopeptidase family protein | Seed | |
8 | RL | 63,899 | Os08g0101000 | ABI3/VP1 transcription factor family protein | Flower |
RL | 125,422 | Os08g0102250 | H0913C04.5 protein | – | |
RFW | 26,726,527 | Os08g0535200 | MtN3-like protein; OsXa13 | Panicle | |
RFW | 26,752,345 | Os08g0535700 | Glycerophosphodiester phosphodiesterase | Seed | |
RFW | 26,906,046 | Os08g0538200 | Protein of unknown function DUF247 plant family protein | – | |
RFW | 26,926,958 | Os08g0538700 | Retinoblastoma-related protein | Callus | |
11 | RWC | 6,061,643 | Os11g0216000 | Pyruvate kinase family protein | Flower |
RFW | 21,681,513 | Os11g0575600 | Lipoxygenase 10 | Callus | |
RFW | 21,851,184 | Os11g0578700 | F-box domain containing protein | Callus |