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Fig. 3 | Rice

Fig. 3

From: Characterization of the Leaf Microbiome from Whole-Genome Sequencing Data of the 3000 Rice Genomes Project

Fig. 3

Rice metabolic pathways are associated with the microbiome structure. a Genome-wide association for the 12 microbial hubs simultaneously using a multivariate linear mixed model with GEMMA software. Left panel, Manhattan plot, using the rice dataset, indicated the major peaks (significant SNPs) distributed across six chromosomes, associated with microbial abundance of the 12 hubs. Right panel, Quartile–quartile plot for expected versus observed −log(P) values. P-values were adjusted with FDR and values lower than 1E-15 were consider significant (blue line). b the significant SNPs found in this study co-localized with a number of agronomic QTLs retrieved from Q-TARO database, associated with resistance or tolerance; morphological trait; and physiological trait

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