From: Grain Size Selection Using Novel Functional Markers Targeting 14 Genes in Rice
Primer Names | Primers sequence (5′-3′) | Enzyme sites | Amplicon size (Digested) bp |
---|---|---|---|
GW2_SNP-F | AAAACCAAAACCTAACACGTGGATACAACA | NspI | 115 (84) |
GW2_SNP-R | GGCGGTGAAGATAGATGTACT | ||
GW2_InDel-F | CTCACACTGCTCAGCCTACA | PstI | 158 (127) |
GW2_InDel-R | CACGATACTCCACAGCATAACTGGGAGTCT | ||
GS2_SNP-F | GAGCGCCACATGCACCGCGGCCGCATACGT | SnaBI | 287 (255) |
GS2_SNP-R | TTGCCTGTTCCACCACCAACAGC | ||
qLGY3_InDel-F | GGGTATTCTTCTTTTCTTCCA | StyI | 448 (371) |
qLGY3_InDel-R | TGTCTGCTGCTTCATTGCT | ||
GS3_SNP1-F | CGAAGGGATCCACGCTGCCTCCAGATGATT | HinfI | 170 (140) |
GS3_SNP1-R | AGTTGCTTAAAAAGATAACGGTCAAA | ||
GS3_SNP2-F | CAAACATGAAAACCTTGTCT | HaeIII | 186 (155) |
GS3_SNP2-R | AAATAAAACGTGTGATTTAATCGTTAACGGC | ||
GL3.1_SNP-F | TGCACGATTCTATCTGGTTCAGTGGTCGA | SalI | 224 (193) |
GL3.1_SNP-R | CTAAACAAACAGGTTTTCTTAC | ||
TGW3_SNP-F | TGCACTGCCAAAATCACATATTTTGAGCCG | HpaII | 299 (269) |
TGW3_SNP-R | TCAACTACCACTAGGTCCAC | ||
GS5_InDel-F | ACTCCCATGGAATTACTAGAGAAGCCAAGC | AluI | 262 (205/172) |
GS5_InDel-R | AGGAGAAGAAAAGGTGAAAAGT | ||
GW5_InDel-F | TGCGTCGGTCGTTGGAGG | Â | 419/1631 |
GW5_InDel-R | GCGAGCGAGCGTGTGTAGG | ||
GS6_InDel-F | TCTTCTTCCCTTCCCTTCCAC | Â | 113/125 |
GS6_InDel-R | TGCCTCACCATTACCACTCCT | ||
TGW6_InDel-F | AGCCCCAGCTACACGAAAAACAAGTGCCCG | HpaII | 154 (104/72) |
TGW6_InDel-R | GACCAACTCGCATCAATCCC | ||
TGW6_SNP-F | ATGCGAGTTGGTCCAAAAGG | SacI | 296 (266) |
TGW6_SNP-R | GCAACGATCAGATGTGTTCGGTCAGAGCT | ||
GW6a_InDel1-F | TGCACCTCTCTCGTGTTTCT | BclI | 147 (117) |
GW6a_InDel1-R | TTATTTTCGTTCAATTTTTCTATGGCTGAT | ||
GW6a_InDel2-F | ATTACTCTTGATTTTTGTCTGTT | Â | 186/161 |
GW6a_InDel2-R | GAGTTTGCATGTTCGTTCT | ||
GLW7_InDel-F | CTCGAGCTCGAGCTCATG | Â | 107/101/98 |
GLW7_InDel-R | TCCCTTTCAACCTTTTCCA | ||
GLW7_InDel_dCaps-F | CCTCCTCCTCCTCCGCCTTCCACTTCGACT | HinfI | 133 (101) |
GLW7_InDel_dCaps-R | TGCTACTGTGTGCTGTGTGCT | ||
GL7_Dup-F | GATGAGCTGACAAGAGCAAAG | Â | 0/314 |
GL7_Dup-R | AGAGGATGGGGATGAAAGAAT | ||
GL7_InDel1-F | CAGCTCACGCACATCCAAC | Â | 112/101 |
GL7_InDel1-R | ACCATACCACATCTCATCTCAC | ||
GL7_InDel2-F | GGACGCGTGAGATGAGATGTG | Â | 118/100 |
GL7_InDel2-R | CTCCCGCTTATTTCAACCCC | ||
GW8_InDel-F | GTGCGTGCGTCAACACACAG | Â | 88/98 |
GW8_InDel-R | TGAGATCCCACTCCATGGCC |