Table 2 Numbers of significant SNPs, regions and genes found to be associated with the different traits. Significant SNPs were detected with the different models using the Fisher combination method and based on a 10^− 5 p-value threshold. The “EMMA”, “MLM” and “LFMM” columns indicate the number of SNPs detected for each method. The “2_met” and “3_met” columns indicate the number of SNPs detected by two or three methods respectively. Fifty kb windows around these SNPs defined independent genomic regions associated with each variable and only regions containing SNPs detected with at least two methods were retained

From: Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima