Table 1 List of traits and variables used for the association study
From: Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Category | Trait | Source | Variables | Transformation used? |
|---|---|---|---|---|
Flowering | Early sowing | Field | DFT2012a | no |
DFT2014a | no | |||
Late sowing | Field | DFT2012b | yes | |
DFT2014b | yes | |||
Panicle | Rachis length (RL) | Field | RL2012 | yes |
RL2014 | yes | |||
Spikelet number (SpN) | Field | SpN2012 | yes | |
SpN2014 | yes | |||
Primary branch number (PBN) | Field | PBN2012 | yes | |
PBN2014 | yes | |||
Secondary branch number (SBN) | Field | SBN2012 | yes | |
SBN2014 | yes | |||
Primary branch average length (PBL) | Field | PBL2012 | yes | |
PBL2014 | yes | |||
Secondary branch average length (SBL) | Field | SBL2012 | yes | |
SBL2014 | yes | |||
Primary branch internode average length (PBintL) | Field | PBintL2012 | no | |
PBintL2014 | no | |||
Secondary branch internode average length (SBintL) | Field | SBintL2012 | yes | |
SBintL2014 | yes | |||
Resistance | Resistance to Rice yellow mottle virus (RYMV) | Greenhouse | RYMV1 | yes |
RYMV2 | yes | |||
RYMV3 | yes | |||
Environment | Climate-related variables principal component (bioPC) | Database | bioPC1 | yes |
bioPC2 | yes | |||
Monthly maximum temperature principal component (Tmax) | Database | tmaxPC1 | yes | |
tmaxPC2 | yes |