Rice

Table 3 Candidate gene haplotype group and the composition of each haplotype SNP

From: QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study

Gene	hap1/ Number	hap2/ Number	hap3/ Number
LOC_Os11g37230	TT/261(XBJZ)	GT/10(KY131)	GA/10
LOC_Os11g37270	A/264(KY131)	G/14(XBJZ)
LOC_Os11g37300	CTC/250(KY131)	TCT/13(XBJZ)	CCC/12
LOC_Os11g37320	C/271(KY131)	T/15(XBJZ)
LOC_Os11g37340	CT/272(XBJZ)	TC/15(KY131)
LOC_Os11g37390	A/269(KY131)	T/17(XBJZ)

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