Skip to main content

Table 1 QTLs for RL, ARL and RRL based on the mean trait values of three replications in 184 RILs

From: QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study

Traits

QTLs

Left Marker

Right Marker

Chr.

LOD

R2(%)

Additive effect

QTL in previous study

RL

qRL1

C1_4655517

C1_4984609

1

2.76

4.03

0.41

 

qRL4

C4_32090432

C4_32195798

4

3.30

7.75

−0.56

 

ARL

qARL4

C4_32090432

C4_32195798

4

4.32

7.73

−0.39

qIR4 (Wang et al. 2011)

qPH4 (Thomson et al. 2010)

qARL6

C6_10554837

C6_19920701

6

3.52

6.87

0.37

qDRW6 (Wang et al. 2012b).

qARL11

C11_21685006

C11_22560140

11

6.03

11.38

−0.48

qSKC11 (Zang et al. 2008)

RRL

qRRL6–1

C6_4815311

C6_4915271

6

3.15

4.05

−3.03

 

qRRL6–2

C6_10554837

C6_19920701

6

3.96

6.35

3.72

qDRW6 (Wang et al. 2012b).

qRRL11

C11_21685006

C11_22560140

11

7.55

18.75

−6.45

qSKC11 (Zang et al. 2008)

  1. R2 (%): Phenotypic variance explained