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Table 1 QTLs for RL, ARL and RRL based on the mean trait values of three replications in 184 RILs

From: QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study

Traits QTLs Left Marker Right Marker Chr. LOD R2(%) Additive effect QTL in previous study
RL qRL1 C1_4655517 C1_4984609 1 2.76 4.03 0.41  
qRL4 C4_32090432 C4_32195798 4 3.30 7.75 −0.56  
ARL qARL4 C4_32090432 C4_32195798 4 4.32 7.73 −0.39 qIR4 (Wang et al. 2011)
qPH4 (Thomson et al. 2010)
qARL6 C6_10554837 C6_19920701 6 3.52 6.87 0.37 qDRW6 (Wang et al. 2012b).
qARL11 C11_21685006 C11_22560140 11 6.03 11.38 −0.48 qSKC11 (Zang et al. 2008)
RRL qRRL6–1 C6_4815311 C6_4915271 6 3.15 4.05 −3.03  
qRRL6–2 C6_10554837 C6_19920701 6 3.96 6.35 3.72 qDRW6 (Wang et al. 2012b).
qRRL11 C11_21685006 C11_22560140 11 7.55 18.75 −6.45 qSKC11 (Zang et al. 2008)
  1. R2 (%): Phenotypic variance explained