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Rice
Fig. 3 | Rice

Fig. 3

From: QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study

Fig. 3

Identification of candidate genes by linkage mapping and GWAS. a LD decay analysis of the whole genome in 295 japonica rice varieties. When r2 decays to half of the maximum value, the corresponding physical distance (109 kb) is recorded as the LD attenuation distance of the whole genome. b A QTL related to alkali tolerance on chromosome 11 was identified in 184 RILs and mapped to the interval between the markers C11_21685006 and C11_22560140 by linkage mapping. c Physical location of the lead SNP (C11_21,999,659) on chromosome 11 detected by the GWAS. d 35 genes in the 218 kb region

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