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Fig. 7 | Rice

Fig. 7

From: Genome-Wide Association Study for Yield and Yield Related Traits under Reproductive Stage Drought in a Diverse indica-aus Rice Panel

Fig. 7

Circular manhattan plot and qq plot for Grain yield (GY) for- a. lowland non-stress 2014WS (LL_N_WS); b. lowland non-stress 2015DS (LL_N_DS); c. lowland stress 2014WS (LL_S_WS); d. lowland stress 2015DS (LL_S_DS); e. upland stress 2014WS (UL_S_WS); f. upland stress 2015DS (UL_S_DS) divided into two levels- subgroup level with i. aus lines and ii. indica lines and iii. comlpete diversity set of 280 lines for p-values obtained using Farm-CPU menthod at two significance thresholds of 1e-4 (blue) and 1e-6 (red). The outermost ring depicts the SNP distribution in the 215,250 SNP working set; to explore the effect of population structure in detection of significant marker trait associations

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